Hi,
The Feat registration works odd to me, it works well only for Registration of highres to standard but Registration of example_func to standard and the other ones are wrong, the brain image is moved upwards and misses the red contour.
Any idea why?
Bellow is the log of the Feat
Thanks!
Progress Report / Log
Started at Tue Nov 6 13:52:58 CET 2018
Feat main script
/bin/cp /tmp/feat_KRmtZD.fsf design.fsf
/usr/local/fsl/bin/feat_model design
mkdir .files;cp /usr/local/fsl/doc/fsl.css .files;cp -r /usr/local/fsl/doc/images .files/images
/usr/local/fsl/bin/fsl_sub -T 10 -l logs -N feat0_init /usr/local/fsl/bin/feat /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/design.fsf -D /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat -I 1 -init
14874
/usr/local/fsl/bin/fsl_sub -T 134 -l logs -N feat2_pre -j 14874 /usr/local/fsl/bin/feat /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/design.fsf -D /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat -I 1 -prestats
14954
/usr/local/fsl/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 14954 /usr/local/fsl/bin/feat /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/design.fsf -D /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat -stop
Initialisation
/usr/local/fsl/bin/fslmaths /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/__fMRI_RESTING_S_20180508110525_9 prefiltered_func_data -odt float
Total original volumes = 200
/usr/local/fsl/bin/fslroi prefiltered_func_data example_func 100 1
Preprocessing:Stage 1
/usr/local/fsl/bin/mainfeatreg -F 6.00 -d /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat -l /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/logs/feat2_pre -R /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/report_unwarp.html -r /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/report_reg.html -i /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/example_func.nii.gz -h /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/__SAG_3D_IR_20180508110525_3 -w BBR -x 90 -s /usr/local/fsl/data/standard/MNI152_T1_2mm_brain -y 12 -z 90
Option -F ( FEAT version parameter ) selected with argument "6.00"
Option -d ( output directory ) selected with argument "/Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat"
Option -l ( logfile )input with argument "/Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/logs/feat2_pre"
Option -R ( html unwarping report ) selected with argument "/Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/report_unwarp.html"
Option -r ( html registration report ) selected with argument "/Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/report_reg.html"
Option -i ( main input ) input with argument "/Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/example_func.nii.gz"
Option -h ( high-res structural image ) selected with argument "/Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/__SAG_3D_IR_20180508110525_3"
Option -w ( highres dof ) selected with argument "BBR"
Option -x ( highres search ) selected with argument "90"
Option -s ( standard image ) selected with argument "/usr/local/fsl/data/standard/MNI152_T1_2mm_brain"
Option -y ( standard dof ) selected with argument "12"
Option -z ( standard search ) selected with argument "90"
Registration
/bin/mkdir -p /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/reg
/usr/local/fsl/bin/fslmaths /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/__SAG_3D_IR_20180508110525_3 highres
/usr/local/fsl/bin/fslmaths /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/__SAG_3D_IR_20180508110525_3 highres_head
/usr/local/fsl/bin/fslmaths /usr/local/fsl/data/standard/MNI152_T1_2mm_brain standard
did not find file: example_func2highres.mat. Generating transform.
/usr/local/fsl/bin/epi_reg --epi=example_func --t1=highres_head --t1brain=highres --out=example_func2highres
Running FAST segmentation FLIRT pre-alignment Running BBR 0.996395 0.992338 -0.059170 -0.108460 0.000000 0.071776 0.990620 0.116274 0.000000 0.100563 -0.123168 0.987277 0.000000 -106.877694 40.631984 457.536828 1.000000
/usr/local/fsl/bin/convert_xfm -inverse -omat highres2example_func.mat example_func2highres.mat
/usr/local/fsl/bin/slicer example_func2highres highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2highres1.png ; /usr/local/fsl/bin/slicer highres example_func2highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2highres2.png ; /usr/local/fsl/bin/pngappend example_func2highres1.png - example_func2highres2.png example_func2highres.png; /bin/rm -f sl?.png example_func2highres2.png
/bin/rm example_func2highres1.png
did not find file: highres2standard.mat. Generating transform.
/usr/local/fsl/bin/flirt -in highres -ref standard -out highres2standard -omat highres2standard.mat -cost corratio -dof 12 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -interp trilinear
/usr/local/fsl/bin/convert_xfm -inverse -omat standard2highres.mat highres2standard.mat
/usr/local/fsl/bin/slicer highres2standard standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png highres2standard1.png ; /usr/local/fsl/bin/slicer standard highres2standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png highres2standard2.png ; /usr/local/fsl/bin/pngappend highres2standard1.png - highres2standard2.png highres2standard.png; /bin/rm -f sl?.png highres2standard2.png
/bin/rm highres2standard1.png
/usr/local/fsl/bin/convert_xfm -omat example_func2standard.mat -concat highres2standard.mat example_func2highres.mat
/usr/local/fsl/bin/flirt -ref standard -in example_func -out example_func2standard -applyxfm -init example_func2standard.mat -interp trilinear
Found file: example_func2standard.mat.
/usr/local/fsl/bin/convert_xfm -inverse -omat standard2example_func.mat example_func2standard.mat
/usr/local/fsl/bin/slicer example_func2standard standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2standard1.png ; /usr/local/fsl/bin/slicer standard example_func2standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2standard2.png ; /usr/local/fsl/bin/pngappend example_func2standard1.png - example_func2standard2.png example_func2standard.png; /bin/rm -f sl?.png example_func2standard2.png
Preprocessing:Stage 2
/usr/local/fsl/bin/mcflirt -in prefiltered_func_data -out prefiltered_func_data_mcf -mats -plots -reffile example_func -rmsrel -rmsabs -spline_final
/bin/mkdir -p mc ; /bin/mv -f prefiltered_func_data_mcf.mat prefiltered_func_data_mcf.par prefiltered_func_data_mcf_abs.rms prefiltered_func_data_mcf_abs_mean.rms prefiltered_func_data_mcf_rel.rms prefiltered_func_data_mcf_rel_mean.rms mc
/usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated rotations (radians)' -u 1 --start=1 --finish=3 -a x,y,z -w 640 -h 144 -o rot.png
/usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated translations (mm)' -u 1 --start=4 --finish=6 -a x,y,z -w 640 -h 144 -o trans.png
/usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf_abs.rms,prefiltered_func_data_mcf_rel.rms -t 'MCFLIRT estimated mean displacement (mm)' -u 1 -w 640 -h 144 -a absolute,relative -o disp.png
/usr/local/fsl/bin/fslmaths prefiltered_func_data_mcf -Tmean mean_func
/usr/local/fsl/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/local/fsl/bin/immv mask_mask mask
/usr/local/fsl/bin/fslmaths prefiltered_func_data_mcf -mas mask prefiltered_func_data_bet
/usr/local/fsl/bin/fslstats prefiltered_func_data_bet -p 2 -p 98
0.000000 4609.341309
/usr/local/fsl/bin/fslmaths prefiltered_func_data_bet -thr 460.9341309 -Tmin -bin mask -odt char
/usr/local/fsl/bin/fslstats prefiltered_func_data_mcf -k mask -p 50
3592.911377
/usr/local/fsl/bin/fslmaths mask -dilF mask
/usr/local/fsl/bin/fslmaths prefiltered_func_data_mcf -mas mask prefiltered_func_data_thresh
/usr/local/fsl/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func
/usr/local/fsl/bin/susan prefiltered_func_data_thresh 2694.68353275 2.12314225053 3 1 1 mean_func 2694.68353275 prefiltered_func_data_smooth
/usr/local/fsl/bin/fslmaths prefiltered_func_data_smooth -mas mask prefiltered_func_data_smooth
/usr/local/fsl/bin/fslmaths prefiltered_func_data_smooth -mul 2.78325818555 prefiltered_func_data_intnorm
/usr/local/fsl/bin/fslmaths prefiltered_func_data_intnorm -Tmean tempMean
/usr/local/fsl/bin/fslmaths prefiltered_func_data_intnorm -bptf 20.0 -1 -add tempMean prefiltered_func_data_tempfilt
/usr/local/fsl/bin/imrm tempMean
/usr/local/fsl/bin/fslmaths prefiltered_func_data_tempfilt filtered_func_data
/usr/local/fsl/bin/melodic -i filtered_func_data -o filtered_func_data.ica -v --nobet --bgthreshold=1 --tr=2.500000 -d 0 --mmthresh=0.5 --report --guireport=../../report.html
Melodic Version 3.14
Melodic results will be in filtered_func_data.ica
Create mask ... done
Reading data file filtered_func_data ... done
Estimating data smoothness ... done
Removing mean image ... done
Normalising by voxel-wise variance ... done
Excluding voxels with constant value ... done
Data size : 200 x 133742
Starting PCA ... done
Start whitening using 61 dimensions ...
retaining 91.0531 percent of the variability
... done
Starting ICA estimation using symm
Step no. 1 change : 0.943505
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Step no. 155 change : 5.04046e-05
Step no. 156 change : 4.91618e-05
Convergence after 156 steps
Sorting IC maps
Writing results to :
filtered_func_data.ica/melodic_IC
filtered_func_data.ica/melodic_Tmodes
filtered_func_data.ica/melodic_mix
filtered_func_data.ica/melodic_FTmix
filtered_func_data.ica/melodic_PPCA
filtered_func_data.ica/melodic_ICstats
filtered_func_data.ica/mask
...done
Creating report index page ...done
Running Mixture Modelling on Z-transformed IC maps ...
IC map 1 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 2 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 3 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 4 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 5 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 6 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 7 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 8 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 9 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 10 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 11 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 12 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 13 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 14 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 15 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 16 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 17 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 18 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 19 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 20 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 21 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 22 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 23 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 24 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 25 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 26 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 27 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 28 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 29 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 30 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 31 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 32 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 33 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 34 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 35 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 36 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 37 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 38 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 39 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 40 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 41 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 42 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 43 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 44 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 45 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 46 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 47 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 48 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 49 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 50 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 51 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 52 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 53 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 54 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 55 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 56 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 57 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 58 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 59 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 60 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
IC map 61 ...
calculating mixture-model fit
re-scaling spatial maps ...
thresholding ...
alternative hypothesis test at p > 0.5
creating report page ... done
Writing results to :
filtered_func_data.ica/melodic_IC
filtered_func_data.ica/melodic_Tmodes
filtered_func_data.ica/melodic_mix
filtered_func_data.ica/melodic_FTmix
filtered_func_data.ica/melodic_PPCA
filtered_func_data.ica/melodic_ICstats
filtered_func_data.ica/mask
...done
To view the output report point your web browser at filtered_func_data.ica/report/00index.html
finished!
/usr/local/fsl/bin/fslmaths filtered_func_data -Tmean mean_func
/bin/rm -rf prefiltered_func_data*
########################################################################
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