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Hi, The Feat registration works odd to me, it works well only for Registration of highres to standard but Registration of example_func to standard and the other ones are wrong, the brain image is moved upwards and misses the red contour. Any idea why? Bellow is the log of the Feat Thanks! Progress Report / Log Started at Tue Nov 6 13:52:58 CET 2018 Feat main script /bin/cp /tmp/feat_KRmtZD.fsf design.fsf /usr/local/fsl/bin/feat_model design mkdir .files;cp /usr/local/fsl/doc/fsl.css .files;cp -r /usr/local/fsl/doc/images .files/images /usr/local/fsl/bin/fsl_sub -T 10 -l logs -N feat0_init /usr/local/fsl/bin/feat /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/design.fsf -D /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat -I 1 -init 14874 /usr/local/fsl/bin/fsl_sub -T 134 -l logs -N feat2_pre -j 14874 /usr/local/fsl/bin/feat /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/design.fsf -D /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat -I 1 -prestats 14954 /usr/local/fsl/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 14954 /usr/local/fsl/bin/feat /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/design.fsf -D /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat -stop Initialisation /usr/local/fsl/bin/fslmaths /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/__fMRI_RESTING_S_20180508110525_9 prefiltered_func_data -odt float Total original volumes = 200 /usr/local/fsl/bin/fslroi prefiltered_func_data example_func 100 1 Preprocessing:Stage 1 /usr/local/fsl/bin/mainfeatreg -F 6.00 -d /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat -l /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/logs/feat2_pre -R /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/report_unwarp.html -r /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/report_reg.html -i /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/example_func.nii.gz -h /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/__SAG_3D_IR_20180508110525_3 -w BBR -x 90 -s /usr/local/fsl/data/standard/MNI152_T1_2mm_brain -y 12 -z 90 Option -F ( FEAT version parameter ) selected with argument "6.00" Option -d ( output directory ) selected with argument "/Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat" Option -l ( logfile )input with argument "/Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/logs/feat2_pre" Option -R ( html unwarping report ) selected with argument "/Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/report_unwarp.html" Option -r ( html registration report ) selected with argument "/Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/report_reg.html" Option -i ( main input ) input with argument "/Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/example_func.nii.gz" Option -h ( high-res structural image ) selected with argument "/Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/__SAG_3D_IR_20180508110525_3" Option -w ( highres dof ) selected with argument "BBR" Option -x ( highres search ) selected with argument "90" Option -s ( standard image ) selected with argument "/usr/local/fsl/data/standard/MNI152_T1_2mm_brain" Option -y ( standard dof ) selected with argument "12" Option -z ( standard search ) selected with argument "90" Registration /bin/mkdir -p /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/+.feat/reg /usr/local/fsl/bin/fslmaths /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/__SAG_3D_IR_20180508110525_3 highres /usr/local/fsl/bin/fslmaths /Users/jaime/vallecas/data/parpadeo/images_1/Subject_0441_y7/__SAG_3D_IR_20180508110525_3 highres_head /usr/local/fsl/bin/fslmaths /usr/local/fsl/data/standard/MNI152_T1_2mm_brain standard did not find file: example_func2highres.mat. Generating transform. /usr/local/fsl/bin/epi_reg --epi=example_func --t1=highres_head --t1brain=highres --out=example_func2highres Running FAST segmentation FLIRT pre-alignment Running BBR 0.996395 0.992338 -0.059170 -0.108460 0.000000 0.071776 0.990620 0.116274 0.000000 0.100563 -0.123168 0.987277 0.000000 -106.877694 40.631984 457.536828 1.000000 /usr/local/fsl/bin/convert_xfm -inverse -omat highres2example_func.mat example_func2highres.mat /usr/local/fsl/bin/slicer example_func2highres highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2highres1.png ; /usr/local/fsl/bin/slicer highres example_func2highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2highres2.png ; /usr/local/fsl/bin/pngappend example_func2highres1.png - example_func2highres2.png example_func2highres.png; /bin/rm -f sl?.png example_func2highres2.png /bin/rm example_func2highres1.png did not find file: highres2standard.mat. Generating transform. /usr/local/fsl/bin/flirt -in highres -ref standard -out highres2standard -omat highres2standard.mat -cost corratio -dof 12 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -interp trilinear /usr/local/fsl/bin/convert_xfm -inverse -omat standard2highres.mat highres2standard.mat /usr/local/fsl/bin/slicer highres2standard standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png highres2standard1.png ; /usr/local/fsl/bin/slicer standard highres2standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png highres2standard2.png ; /usr/local/fsl/bin/pngappend highres2standard1.png - highres2standard2.png highres2standard.png; /bin/rm -f sl?.png highres2standard2.png /bin/rm highres2standard1.png /usr/local/fsl/bin/convert_xfm -omat example_func2standard.mat -concat highres2standard.mat example_func2highres.mat /usr/local/fsl/bin/flirt -ref standard -in example_func -out example_func2standard -applyxfm -init example_func2standard.mat -interp trilinear Found file: example_func2standard.mat. /usr/local/fsl/bin/convert_xfm -inverse -omat standard2example_func.mat example_func2standard.mat /usr/local/fsl/bin/slicer example_func2standard standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2standard1.png ; /usr/local/fsl/bin/slicer standard example_func2standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ; /usr/local/fsl/bin/pngappend sla.png + slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png + sll.png example_func2standard2.png ; /usr/local/fsl/bin/pngappend example_func2standard1.png - example_func2standard2.png example_func2standard.png; /bin/rm -f sl?.png example_func2standard2.png Preprocessing:Stage 2 /usr/local/fsl/bin/mcflirt -in prefiltered_func_data -out prefiltered_func_data_mcf -mats -plots -reffile example_func -rmsrel -rmsabs -spline_final /bin/mkdir -p mc ; /bin/mv -f prefiltered_func_data_mcf.mat prefiltered_func_data_mcf.par prefiltered_func_data_mcf_abs.rms prefiltered_func_data_mcf_abs_mean.rms prefiltered_func_data_mcf_rel.rms prefiltered_func_data_mcf_rel_mean.rms mc /usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated rotations (radians)' -u 1 --start=1 --finish=3 -a x,y,z -w 640 -h 144 -o rot.png /usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated translations (mm)' -u 1 --start=4 --finish=6 -a x,y,z -w 640 -h 144 -o trans.png /usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf_abs.rms,prefiltered_func_data_mcf_rel.rms -t 'MCFLIRT estimated mean displacement (mm)' -u 1 -w 640 -h 144 -a absolute,relative -o disp.png /usr/local/fsl/bin/fslmaths prefiltered_func_data_mcf -Tmean mean_func /usr/local/fsl/bin/bet2 mean_func mask -f 0.3 -n -m; /usr/local/fsl/bin/immv mask_mask mask /usr/local/fsl/bin/fslmaths prefiltered_func_data_mcf -mas mask prefiltered_func_data_bet /usr/local/fsl/bin/fslstats prefiltered_func_data_bet -p 2 -p 98 0.000000 4609.341309 /usr/local/fsl/bin/fslmaths prefiltered_func_data_bet -thr 460.9341309 -Tmin -bin mask -odt char /usr/local/fsl/bin/fslstats prefiltered_func_data_mcf -k mask -p 50 3592.911377 /usr/local/fsl/bin/fslmaths mask -dilF mask /usr/local/fsl/bin/fslmaths prefiltered_func_data_mcf -mas mask prefiltered_func_data_thresh /usr/local/fsl/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func /usr/local/fsl/bin/susan prefiltered_func_data_thresh 2694.68353275 2.12314225053 3 1 1 mean_func 2694.68353275 prefiltered_func_data_smooth /usr/local/fsl/bin/fslmaths prefiltered_func_data_smooth -mas mask prefiltered_func_data_smooth /usr/local/fsl/bin/fslmaths prefiltered_func_data_smooth -mul 2.78325818555 prefiltered_func_data_intnorm /usr/local/fsl/bin/fslmaths prefiltered_func_data_intnorm -Tmean tempMean /usr/local/fsl/bin/fslmaths prefiltered_func_data_intnorm -bptf 20.0 -1 -add tempMean prefiltered_func_data_tempfilt /usr/local/fsl/bin/imrm tempMean /usr/local/fsl/bin/fslmaths prefiltered_func_data_tempfilt filtered_func_data /usr/local/fsl/bin/melodic -i filtered_func_data -o filtered_func_data.ica -v --nobet --bgthreshold=1 --tr=2.500000 -d 0 --mmthresh=0.5 --report --guireport=../../report.html Melodic Version 3.14 Melodic results will be in filtered_func_data.ica Create mask ... done Reading data file filtered_func_data ... done Estimating data smoothness ... done Removing mean image ... done Normalising by voxel-wise variance ... done Excluding voxels with constant value ... done Data size : 200 x 133742 Starting PCA ... done Start whitening using 61 dimensions ... retaining 91.0531 percent of the variability ... done Starting ICA estimation using symm Step no. 1 change : 0.943505 Step no. 2 change : 0.224871 Step no. 3 change : 0.0747827 Step no. 4 change : 0.0481219 Step no. 5 change : 0.0365843 Step no. 6 change : 0.0320263 Step no. 7 change : 0.0226615 Step no. 8 change : 0.0175984 Step no. 9 change : 0.0141098 Step no. 10 change : 0.0149054 Step no. 11 change : 0.0129849 Step no. 12 change : 0.0111707 Step no. 13 change : 0.0113642 Step no. 14 change : 0.0095607 Step no. 15 change : 0.00715731 Step no. 16 change : 0.00562082 Step no. 17 change : 0.00462123 Step no. 18 change : 0.00426238 Step no. 19 change : 0.00467218 Step no. 20 change : 0.00519164 Step no. 21 change : 0.00556686 Step no. 22 change : 0.00552086 Step no. 23 change : 0.0049731 Step no. 24 change : 0.00411733 Step no. 25 change : 0.00324799 Step no. 26 change : 0.00255056 Step no. 27 change : 0.00206154 Step no. 28 change : 0.00173887 Step no. 29 change : 0.0015258 Step no. 30 change : 0.00137735 Step no. 31 change : 0.0012648 Step no. 32 change : 0.00117307 Step no. 33 change : 0.0010966 Step no. 34 change : 0.00103525 Step no. 35 change : 0.000990343 Step no. 36 change : 0.000961355 Step no. 37 change : 0.000943914 Step no. 38 change : 0.000929494 Step no. 39 change : 0.000906975 Step no. 40 change : 0.00104328 Step no. 41 change : 0.00123962 Step no. 42 change : 0.00147418 Step no. 43 change : 0.00173238 Step no. 44 change : 0.00197604 Step no. 45 change : 0.00214433 Step no. 46 change : 0.00217415 Step no. 47 change : 0.00203454 Step no. 48 change : 0.00175013 Step no. 49 change : 0.00142232 Step no. 50 change : 0.00114155 Step no. 51 change : 0.000886275 Step no. 52 change : 0.000678868 Step no. 53 change : 0.000521285 Step no. 54 change : 0.000405677 Step no. 55 change : 0.000321917 Step no. 56 change : 0.000296354 Step no. 57 change : 0.000283079 Step no. 58 change : 0.000270816 Step no. 59 change : 0.000259082 Step no. 60 change : 0.000247582 Step no. 61 change : 0.000237269 Step no. 62 change : 0.000251966 Step no. 63 change : 0.000265309 Step no. 64 change : 0.000276597 Step no. 65 change : 0.000285094 Step no. 66 change : 0.000290102 Step no. 67 change : 0.000291037 Step no. 68 change : 0.000287517 Step no. 69 change : 0.000279431 Step no. 70 change : 0.000266974 Step no. 71 change : 0.000250654 Step no. 72 change : 0.000231249 Step no. 73 change : 0.000236736 Step no. 74 change : 0.000243403 Step no. 75 change : 0.000260291 Step no. 76 change : 0.000291461 Step no. 77 change : 0.000327711 Step no. 78 change : 0.000368683 Step no. 79 change : 0.000412995 Step no. 80 change : 0.000457904 Step no. 81 change : 0.000499216 Step no. 82 change : 0.000531677 Step no. 83 change : 0.000549954 Step no. 84 change : 0.000550077 Step no. 85 change : 0.000530789 Step no. 86 change : 0.000494147 Step no. 87 change : 0.000444979 Step no. 88 change : 0.000389427 Step no. 89 change : 0.000333303 Step no. 90 change : 0.000331985 Step no. 91 change : 0.000340856 Step no. 92 change : 0.000345838 Step no. 93 change : 0.000346746 Step no. 94 change : 0.000343647 Step no. 95 change : 0.00033691 Step no. 96 change : 0.000327183 Step no. 97 change : 0.000315336 Step no. 98 change : 0.000302367 Step no. 99 change : 0.000289307 Step no. 100 change : 0.000277129 Step no. 101 change : 0.000266687 Step no. 102 change : 0.000258677 Step no. 103 change : 0.000253625 Step no. 104 change : 0.000251896 Step no. 105 change : 0.000253712 Step no. 106 change : 0.000269198 Step no. 107 change : 0.000288046 Step no. 108 change : 0.000310155 Step no. 109 change : 0.000335639 Step no. 110 change : 0.00036447 Step no. 111 change : 0.000396407 Step no. 112 change : 0.000430914 Step no. 113 change : 0.000467063 Step no. 114 change : 0.000503461 Step no. 115 change : 0.000538208 Step no. 116 change : 0.000568948 Step no. 117 change : 0.000593032 Step no. 118 change : 0.000607832 Step no. 119 change : 0.000611164 Step no. 120 change : 0.000601742 Step no. 121 change : 0.000579529 Step no. 122 change : 0.000545844 Step no. 123 change : 0.00050316 Step no. 124 change : 0.000454648 Step no. 125 change : 0.00040361 Step no. 126 change : 0.000352968 Step no. 127 change : 0.000304951 Step no. 128 change : 0.000260994 Step no. 129 change : 0.000221811 Step no. 130 change : 0.000187565 Step no. 131 change : 0.000158051 Step no. 132 change : 0.000139914 Step no. 133 change : 0.0001247 Step no. 134 change : 0.000110398 Step no. 135 change : 9.71585e-05 Step no. 136 change : 8.50661e-05 Step no. 137 change : 7.86899e-05 Step no. 138 change : 7.66286e-05 Step no. 139 change : 7.43335e-05 Step no. 140 change : 7.18307e-05 Step no. 141 change : 6.91516e-05 Step no. 142 change : 6.63307e-05 Step no. 143 change : 6.46641e-05 Step no. 144 change : 6.36361e-05 Step no. 145 change : 6.25585e-05 Step no. 146 change : 6.14376e-05 Step no. 147 change : 6.02799e-05 Step no. 148 change : 5.9092e-05 Step no. 149 change : 5.78803e-05 Step no. 150 change : 5.66508e-05 Step no. 151 change : 5.54088e-05 Step no. 152 change : 5.41593e-05 Step no. 153 change : 5.29063e-05 Step no. 154 change : 5.16537e-05 Step no. 155 change : 5.04046e-05 Step no. 156 change : 4.91618e-05 Convergence after 156 steps Sorting IC maps Writing results to : filtered_func_data.ica/melodic_IC filtered_func_data.ica/melodic_Tmodes filtered_func_data.ica/melodic_mix filtered_func_data.ica/melodic_FTmix filtered_func_data.ica/melodic_PPCA filtered_func_data.ica/melodic_ICstats filtered_func_data.ica/mask ...done Creating report index page ...done Running Mixture Modelling on Z-transformed IC maps ... IC map 1 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 2 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 3 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 4 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 5 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 6 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 7 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 8 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 9 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 10 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 11 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 12 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 13 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 14 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 15 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 16 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 17 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 18 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 19 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 20 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 21 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 22 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 23 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 24 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 25 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 26 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 27 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 28 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 29 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 30 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 31 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 32 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 33 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 34 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 35 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 36 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 37 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 38 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 39 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 40 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 41 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 42 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 43 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 44 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 45 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 46 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 47 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 48 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 49 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 50 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 51 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 52 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 53 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 54 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 55 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 56 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 57 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 58 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 59 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 60 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done IC map 61 ... calculating mixture-model fit re-scaling spatial maps ... thresholding ... alternative hypothesis test at p > 0.5 creating report page ... done Writing results to : filtered_func_data.ica/melodic_IC filtered_func_data.ica/melodic_Tmodes filtered_func_data.ica/melodic_mix filtered_func_data.ica/melodic_FTmix filtered_func_data.ica/melodic_PPCA filtered_func_data.ica/melodic_ICstats filtered_func_data.ica/mask ...done To view the output report point your web browser at filtered_func_data.ica/report/00index.html finished! /usr/local/fsl/bin/fslmaths filtered_func_data -Tmean mean_func /bin/rm -rf prefiltered_func_data* ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1