Thanks.
I succeed to build skeleton using your code, but outside the fsldir.
It repeatedly given errors inside /usr/local/fsl/data/standard.
Bests,
J.
> On Oct 30, 2018, at 4:53 PM, Steve Smith <[log in to unmask]> wrote:
>
> Hi - I haven't looked in great detail yet but the following seems to give a pretty nice skeleton - you may want to adjust the threshold level but 0.15 seems pretty good. You may need sudo rights to run this.
>
> cd $FSLDIR/data/standard/
> tbss_skeleton -i FSL_HCP1065_FA_1mm -o FSL_HCP1065_FA-skeleton_1mm
> fslmaths FSL_HCP1065_FA-skeleton_1mm -thr 0.15 FSL_HCP1065_FA-skeleton_1mm
>
> Cheers.
>
>
>> On 29 Oct 2018, at 21:29, Christoph K. <[log in to unmask]> wrote:
>>
>> Hello,
>> I am running experimental registration with new HCP1065 template.
>> Is there any availability of HCP1065 skeleton?
>>
>> Bests,
>> J.
>>
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>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Head of Analysis, WIN (FMRIB) Oxford
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 610470
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