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Thanks. I succeed to build skeleton using your code, but outside the fsldir. It repeatedly given errors inside /usr/local/fsl/data/standard. Bests, J. > On Oct 30, 2018, at 4:53 PM, Steve Smith <[log in to unmask]> wrote: > > Hi - I haven't looked in great detail yet but the following seems to give a pretty nice skeleton - you may want to adjust the threshold level but 0.15 seems pretty good. You may need sudo rights to run this. > > cd $FSLDIR/data/standard/ > tbss_skeleton -i FSL_HCP1065_FA_1mm -o FSL_HCP1065_FA-skeleton_1mm > fslmaths FSL_HCP1065_FA-skeleton_1mm -thr 0.15 FSL_HCP1065_FA-skeleton_1mm > > Cheers. > > >> On 29 Oct 2018, at 21:29, Christoph K. <[log in to unmask]> wrote: >> >> Hello, >> I am running experimental registration with new HCP1065 template. >> Is there any availability of HCP1065 skeleton? >> >> Bests, >> J. >> >> ######################################################################## >> >> To unsubscribe from the FSL list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > > > --------------------------------------------------------------------------- > Stephen M. Smith, Professor of Biomedical Engineering > Head of Analysis, WIN (FMRIB) Oxford > > FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK > +44 (0) 1865 610470 > [log in to unmask] http://www.fmrib.ox.ac.uk/~steve > --------------------------------------------------------------------------- > > Stop the cultural destruction of Tibet > > ######################################################################## > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1