FSL experts,
I am trying to run FLIRT using the command:
flirt -in ${a}_MB_run1CoregSource.nii.gz -ref ${a}_MB_run1CoregSource.nii.gz -out ${a}_MB_run1CoregSource2mm.nii.gz -applyisoxfm 2
but I keep getting the error message:
Subject 2061
: No such file or directory line 17: cd: 2061
_MB_run1CoregSource22 :: ERROR: Could not open image 2061
libc++abi.dylib: terminating with uncaught exception of type RBD_COMMON::BaseException
./UMD_ADHD_BA_resizeEPI.sh: line 14: 12651 Abort trap: 6 flirt -in ${a}_MB_run1CoregSource.nii.gz -ref ${a}_MB_run1CoregSource.nii.gz -out ${a}_MB_run1CoregSource2mm.nii.gz -applyisoxfm 2
The file name is correct, so I can't figure out what is going on.
Any thoughts?
Karen
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