Dear List,
Running Gctf with --do_local_refine and --boxsuffix seems to work for several micrographs after submitting the command. The output shows the values changing for each particle. However, several minutes in, the output starts to show same values for all particles in all subsequent images. In my case DefU and DefV get stuck at 11500 and 12500, the only thing that changes is the angle. If I kill the job and re-run it again with --do_unfinished, it works as intended for a couple of images and then again gets stuck with new static values for all following particles and images. Any suggestions on how to get it running correctly?
Thanks!
Andrey
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