Hi Kunlei,
Never use any special characters in the aliases. They will become
symlinks in your linux fielsystem!
Sjors
On 02/28/2018 01:29 PM, CuiKunlei wrote:
> Hi Sjors,
> I'm sure the default_pipeline.star file was not corrputed and I did
> nothing outside the pipeline , maybe it was caused by the alias name
> of this job. I renamed this job and then it works well. The old alias
> name of this job has a charactor "&" .
> Bests.
> Kunlei.
>
>
>
>
> At 2018-02-28 20:44:14, "Sjors Scheres" <[log in to unmask]> wrote:
> >Hi Kunlei,
> >
> >If your default_pipeline.star file is somehow corrputed, you can copy
> >the last good one from the last executed job directory, e.g.
> >Extract/job010/default_pipeline.star
> >
> >Your errors suggest you have odd filenames. Perhaps you tried to do
> >things outside the pipeline?
> >
> >Sjors
> >
> >
> >On 02/28/2018 10:20 AM, CuiKunlei wrote:
> >> Hi all,
> >> I find an error while I run the particle sort job after auto-pick and
> >> extract. I can't run relion-gui after this error occured. Error info
> >> was in this snapshot:
> >>
> >> As we are all know, this directory ".Nodes" was not indispensable, but
> >> why I cant't run relion any more?
> >> The version of relion I used is 2.1 stable.
> >> Thanks in advance.
> >> Kunlei
> >>
> >>
> >>
> >>
> >
> >--
> >Sjors Scheres
> >MRC Laboratory of Molecular Biology
> >Francis Crick Avenue, Cambridge Biomedical Campus
> >Cambridge CB2 0QH, U.K.
> >tel: +44 (0)1223 267061
> >http://www2.mrc-lmb.cam.ac.uk/groups/scheres
>
>
>
>
--
Sjors Scheres
MRC Laboratory of Molecular Biology
Francis Crick Avenue, Cambridge Biomedical Campus
Cambridge CB2 0QH, U.K.
tel: +44 (0)1223 267061
http://www2.mrc-lmb.cam.ac.uk/groups/scheres
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