Sorry, may have missed that! Reran again with one of the same errors reported initially:
[edub@login1 run1.feat]$ feat_model design
terminate called after throwing an instance of 'NEWMAT::ProgramException'
Aborted
Thanks, Matthew!
Erin
--------------------------------
Hi Erin,
Can I just double check that you ran:
feat_model design ( with an underscore connecting feat_model )
and not
feat model design?
Kindest Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
> On 21 Nov 2017, at 17:45, Erin W. <[log in to unmask]> wrote:
>
> Thank you for your help, Matthew!
>
> Yes, the 6_MID_AP.nii.gz file has 248 vols. (I just confirmed this with fslhd as well.)
>
> When I run the "feat_model design" within the failed .feat folder, I receive the following error:
>
> grep: /proj/dichterlab/BATA/Analysis/MID/Prestats_1stLev/BA0047/BA0047_V1/antic/run1.feat/model.fsf: No such file or directory
> while executing
> "exec sh -c "grep -a 'fmri(inmelodic)' $filename | tail -n 1 | awk '{ print \$3 }'" "
> (procedure "feat5:load" line 5)
> invoked from within
> "feat5:load -1 1 ${fsfroot}.fsf"
> (file "/nas/longleaf/apps/fsl/5.0.10/fsl/bin/feat" line 309)
>
>
> Best,
> Erin
>
> ------------------------------
> Hello,
> Can you confirm how many volumes
>
> /proj/dichterlab/BATA/Data/Func/BA0047/BA0047_V1/6_MID_AP
>
> has? Also if you just run
>
> feat_model design
>
> in the FEAT directory which fails, do you get any extra error messages?
>
> Kind Regards
> Matthew
>
>
> --------------------------------
> Dr Matthew Webster
> FMRIB Centre
> John Radcliffe Hospital
> University of Oxford
>
>> On 20 Nov 2017, at 21:26, Erin W. <[log in to unmask]> wrote:
>>
>> Hi,
>>
>> I am receiving a similar error message when attempting to run a batch script and unable to determine the cause.
>>
>> Errors as follows:
>>
>> "child killed: SIGABRT
>> while executing
>> "fsl:exec "${FSLDIR}/bin/feat_model design" $fmri(featModelOpts) -N feat0_model -l logs "
>> (procedure "firstLevelMaster" line 43)
>> invoked from within
>> "firstLevelMaster $session"
>> invoked from within
>> "if { $done_something == 0 } {
>>
>> if { ! $fmri(inmelodic) } {
>> if { $fmri(level) == 1 } {
>> for { set session 1 } { $session <= $fmri(mult..."
>> (file "/nas/longleaf/apps/fsl/5.0.10/fsl/bin/feat" line 390)
>> /bin/cp /proj/dichterlab/BATA/Analysis/MID/Prestats_1stLev/BA0047/BA0047_V1/antic/FEAT_run1.fsf design.fsf
>>
>> /nas/longleaf/apps/fsl/5.0.10/fsl/bin/feat_model design"
>>
>>
>> "terminate called after throwing an instance of 'NEWMAT::ProgramException'
>>
>> FATAL ERROR ENCOUNTERED:
>> COMMAND:
>> /nas/longleaf/apps/fsl/5.0.10/fsl/bin/feat_model design
>> ERROR MESSAGE:
>> child killed: SIGABRT
>> END OF ERROR MESSAGE"
>>
>>
>> When I load the design.fsf file for a given participant, all paths appear correctly and it runs without error from the GUI.
>>
>> The only thing that I can possibly think of is that in the template.fsf file (attached), I list "Total Number of Volumes" as "NVOL", which in my batch script uses fslnvols to count the number of volumes (because they may slightly vary per person).
>>
>> In the script it is: NVOL=`fslnvols $FUNCDATA` (when I echo, there are no errors)
>>
>> Any help is appreciated!
>>
>> Best,
>> Erin
>> <template.fsf><design.fsf>
|