I would like to perform k means clustering. I am running the following probtrackx2 command:
/usr/local/fsl/bin/probtrackx2 -x seed_mask.nii.gz -l --omatrix2 --target2=/home/nodif_brain_mask.nii.gz --avoid=/home/exclusion_mask.nii.gz -c 0.2 -S 2000 --steplength=0.5 -P 5000 --fibthresh=0.01 --distthresh=2.0 --sampvox=0.0 --forcedir --opd -s /home/Diffusion.bedpostX/merged -m /home/Diffusion.bedpostX/nodif_brain_mask --dir=/home/output --targetmasks=/home/targetmasks.txt --os2t
I am trying to avoid Matlab due to some licensing issues and would like to do everything using ccops. Is this feasible? If so, what is the ccops commands to perform k means clustering of my seed mask?
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