Dear Rosanne,
Is there any reason that you are using 12 DOF for motion correction?
This does not make a lot of sense typically (as the brain is only translating and rotating, not scaling or skewing due to motion). That is the reason that the mcflirt tool only outputs 6 DOF.
All the best,
Mark
> On 15 Jun 2017, at 19:35, Rosanne Rademaker <[log in to unmask]> wrote:
>
> Hi all,
>
> I am currently running MCFLIRT for motion correction with 12 dof. I want to regress out my motion parameters so have included the -plots flag. However, I noticed that only 6 parameters (x-y-z and roll-pitch-yaw) are saved out. How can I save out the other 6 parameters?
>
> Thanks,
> -Rosanne
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