Dear Oli,
relion_display can still be used for writing out class selections. 
Actually, the Subset Selection jobtype calls to relion_display. The only 
difference with 1.x is the addition of extra flags --allow_save, 
--fn_imgs and fn_parts for this.
HTH,
Sjors

On 06/19/2017 02:14 PM, Oliver Clarke wrote:
> Ahem, guilty as charged…
>
> But although I can see how the pipeline functionality can be extremely useful for some uses, I just like working on the command line better, it’s hard to change old habits. It’s also faster to edit and resubmit jobs on the command line, and I can do so from my phone… and if something goes wrong I always want to see the log anyway, whereas the GUI doesn’t show any errors (well it does, but they don’t fit on the screen of my MacBook, and the GUI is non-resizable).
>
> (Also, any chance of bringing back the capacity to save selected classes from relion_display, rather than having to use subset selection? That was a really handy feature in relion 1.3/1.4…)
>
> Oli
>
>
>> On Jun 19, 2017, at 3:26 AM, Sjors Scheres <[log in to unmask]> wrote:
>>
>> Dear all,
>>
>> At the GRC I spoke to someone who never submitted jobs through the 'Run
>> now!' button on the relion-2 GUI. Instead, this person (and all the people
>> around him) would print the command and submit jobs through self-made job
>> submission scripts. Although this works OK, it makes no use of the
>> 'pipeline' functionality in (the lower part of) the GUI. I'm not sure how
>> wide-spread this way of working is, but I would encourage those who
>> recognise this, to invest a little time in making a standard qsub job
>> submission script for their queue system. That way all jobs can be sent
>> through the GUI, and hence full advantage of the new functionality can be
>> taken.
>>
>> Details on the pipeline functionalities were published in the proceedings
>> of the 2016 CCPEM Spring symposium:
>> https://doi.org/10.1107/S2059798316019276
>> There are more practical instructions in the tutorial on the wiki, and
>> tips and examples of qsub scripts are on the Wiki as well.
>>
>> Have fun,
>> Sjors
>>
>>
>>
>> -- 
>> Sjors Scheres
>> MRC Laboratory of Molecular Biology
>> Francis Crick Avenue, Cambridge Biomedical Campus
>> Cambridge CB2 0QH, U.K.
>> tel: +44 (0)1223 267061
>> http://www2.mrc-lmb.cam.ac.uk/groups/scheres

-- 
Sjors Scheres
MRC Laboratory of Molecular Biology
Francis Crick Avenue, Cambridge Biomedical Campus
Cambridge CB2 0QH, U.K.
tel: +44 (0)1223 267061
http://www2.mrc-lmb.cam.ac.uk/groups/scheres