Hello,
I recently downloaded the latest version of SHAPEIT onto my macOS Sierra (version 10.12.3), and followed the instructions on the SHAPEIT website to practice with the example dataset given. Unfortunately, I keep receiving the following error message:
osxdt01305:~ zareen$ cd shapeit.v2.r837.MacOSX
osxdt01305:shapeit.v2.r837.MacOSX zareen$ shapeit --input-bed gwas.bed gwas.bim gwas.fam \ --input-map genetic_map.txt \ --output-max gwas.phased.haps gwas.phased.sample
-bash: shapeit: command not found
I am hoping that there are no compatibility issues with this SHAPEIT version and my updated Mac. I apologize if these errors are easy to fix-- I am very new to the field.
Any advice is greatly appreciated. Thank you for your help!
Zareen
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