Hi,
I have generated a list of samples to exclude.
qctool -g example.bgen -s example.sample -sample-missing-rate 0.1 -heterozygosity 0.2 0.3 -write-sample-excl-list samples_to_exclude.txt
However, when I try to use this list to get the SNP stats for the rest of the samples using the following command
qctool -g example.bgen -s example.sample -snp-stats example.snp-stats -excl-samples samples_to_exclude.txt
I get the error
File handling exception: InvalidFileFormatError: relating to file "samples_to_exclude.txt".
What could be possibly the problem?
Many thanks,
Klaudia
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