In fact I'm questioning myself about the outputs from the very first step of run_first_all. Although cat *.logs/*.e* yields no results in terminal, when I take a look at the folder, every single subject has a .logs file, each of which containing 34 text files (e.g., "clean_up.e21347.1", "first.e14871.1", "first.o14871.3"...). All *.e* have a size of 0 and are thus empty.
Moreover, for each subject, 3 files *.com *.com2 and *.com3 are generated from the very beginning. I've continued with my analyses as *firstseg.nii.gz and *origsegs.nii.gz, as well as *_first.bvars and *_first.vtk were correctly generated. Segmentation seemed okay when visually checked.
Am I to understand that this an abnormal process?
Thank you
Shady
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