Dear Wai,
Coot allows to rotate groups about bonds. This way you should be able to
modify the pSer into any desired conformation.
Regards,
Tim
On 06/21/2014 12:49 PM, Yu Wai Chen wrote:
> Dear Coot gurus,
>
> I am trying to build a model (i.e. no experimental density) of a
> phosphoserine residue. I used "Extensions->Phosphorylate this residue"
> and got a nice pSer as expected but with some clash with nearly atoms.
> My question is if I can use some of the PTM rotamer library (e.g.
> SwissSidechain) to select a rotamer?
>
> Last time (a month ago in May) I tried this, after "Phosphorylate this
> residue", I remember I was presented with one rotamer which I can use
> the mouse to scan among a pool of rotamers and I can pick one which
> avoids steric clashes. But when I am trying to do it now, I cannot
> replicate this. I am only presented with one single refined rotamer. I
> have been using the same version of Coot (0.7.X).
>
> Thanks for your help.
>
> Wai
>
--
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
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