Hello,
Back from my travels (for the moment at least).
Yes, I agree with Tim. I think that you want Edit Chi Angles (rather
than rotamers).
Paul.
On 21/06/14 14:20, Tim Gruene wrote:
> Dear Wai,
>
> Coot allows to rotate groups about bonds. This way you should be able to
> modify the pSer into any desired conformation.
>
> Regards,
> Tim
>
> On 06/21/2014 12:49 PM, Yu Wai Chen wrote:
>> Dear Coot gurus,
>>
>> I am trying to build a model (i.e. no experimental density) of a
>> phosphoserine residue. I used "Extensions->Phosphorylate this residue"
>> and got a nice pSer as expected but with some clash with nearly atoms.
>> My question is if I can use some of the PTM rotamer library (e.g.
>> SwissSidechain) to select a rotamer?
>>
>> Last time (a month ago in May) I tried this, after "Phosphorylate this
>> residue", I remember I was presented with one rotamer which I can use
>> the mouse to scan among a pool of rotamers and I can pick one which
>> avoids steric clashes. But when I am trying to do it now, I cannot
>> replicate this. I am only presented with one single refined rotamer. I
>> have been using the same version of Coot (0.7.X).
>>
>> Thanks for your help.
>>
>> Wai
>>
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