Hi Moises, Stam,
Thanks a lot. It seems to be working with the suggested parameters. I
plan to run it on a GPU cluster; I had added the -c flag because I
thought it may be easier to get it to work on the CPU first.
Best,
Martin
On 03/12/14 05:59, Stamatios Sotiropoulos wrote:
> Hi Martin,
>
> Just to add to Moises recommendation, bedpostx on HCP data can take many hours, even on a cluster. We use the recent GPU version of bedpostx for the HCP data on a GPU cluster that allows accelerations of two orders of magnitude.
>
> http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0061892
>
> Cheers
> Stam
>
>
>
>
> On 11 Mar 2014, at 21:48, Moises Hernandez Fernandez <[log in to unmask]> wrote:
>
>> Hi Martin,
>>
>> could you try to change the way you set the parameters ?
>>
>> bedpostx /hcp_data/100307/T1w/Diffusion -n 3 -b 1000 -model 2 -w 1 -g -c
>>
>> Cheers,
>> Moises
>
>
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