Dear Mark,
I upgraded FSL to 5.0.6 as you suggested.
I launched setup_masks:
> setup_masks ANOVA.mat ANOVA.con mask sub01.nii sub02.nii sub03.nii sub04.nii sub
05.nii sub06.nii sub07.nii sub08.nii sub09.nii sub10.nii sub11.nii sub12.nii sub
13.nii sub14.nii sub15.nii sub16.nii sub17.nii sub18.nii sub19.nii sub20.nii sub
21.nii sub22.nii sub23.nii sub24.nii sub25.nii sub26.nii sub28.nii sub29.nii sub
30.nii sub31.nii sub32.nii sub34.nii sub35.nii sub36.nii sub37.nii sub38.nii sub
39.nii sub40.nii sub41.nii sub42.nii sub43.nii sub44.nii sub45.nii sub47.nii sub
48.nii sub49.nii sub50.nii sub51.nii sub52.nii sub53.nii sub54.nii sub55.nii sub
56.nii sub57.nii sub58.nii sub59.nii sub60.nii sub61.nii sub62.nii sub63.nii
Then:
randomise -i all_FA_skeletonised.nii -o FA_all_lesions -d mask.mat -t mask.con --vxl=8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67 --vxf=mask_0008,mask_0009,mask_0010,mask_0011,mask_0012,mask_0013,mask_0014,mask_0015,mask_0016,mask_0017,mask_0018,mask_0019,mask_0020,mask_0021,mask_0022,mask_0023,mask_0024,mask_0025,mask_0026,mask_0027,mask_0028,mask_0029,mask_0030,mask_0031,mask_0032,mask_0033,mask_0034,mask_0035,mask_0036,mask_0037,mask_0038,mask_0039,mask_0040,mask_0041,mask_0042,mask_0043,mask_0044,mask_0045,mask_0046,mask_0047,mask_0048,mask_0049,mask_0050,mask_0051,mask_0052,mask_0053,mask_0054,mask_0055,mask_0056,mask_0057,mask_0058,mask_0059,mask_0060,mask_0061,mask_0062,mask_0063,mask_0064,mask_0065,mask_0066,mask_0067 -f ANOVA.fts -V -n 5000 --T2
Now it gives me a different error:
Loading Data:
Loading voxelwise ev: mask_0008 for EV 8
Image Exception : #3 :: Mask of different size used in matrix()
ERROR: Program failed
An exception has been thrown
Mask of different size used in matrix()
Exiting
Which matrix? I Used fslinfo to verify the size of the masks but they are similar.
What do you suggest?
Thanks
Domenico
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