I am helping someone by setting up RELION. I have been debugging a problem following the tutorial before starting the real project. Using the provided (same if using the fetched release ie v3.5, Mar 2013) ctffind3.exe gives errors whereas omitting use of ctffind3 does not. As far as I can see, having looked in the produced .com files, at the GUI and at the command-line, a problem is that ctffind3 expects 7 values on CARD 4 whereas relion GUI/relion_preprocess[_mpi] is passing it only 6.
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