Hi Eleonora,
This seems to be a bug (regression?). The prev. version works pretty well in cases like yours (and mine ;-)
Cheers,
Latchezar
> -----Original Message-----
> From: Oxford Statistical Genetics Software
> [mailto:[log in to unmask]] On Behalf Of Eleonora Porcu
> Sent: Friday, November 15, 2013 1:05 PM
> To: [log in to unmask]
> Subject: Re: [OXSTATGEN] SHAPEIT handles families
>
> Hi,
>
> Actually, I tried shapeit v2.r727
> with only this family
>
> 1 1028 0 0 1 -9
> 1 1029 0 0 2 -9
> 1 1030 1028 1029 1 -9
> 1 1031 1028 1029 1 -9
>
> and I have this error message:
> 2 samples are included in several duos/trios, check list in
> shapeit_08112013_11h22m16s_d8a17d67-edff-439c-8e02-571cdfe1b689.inc.me
>
> Thank you
> Best
>
> Eleonora
>
> 2013/11/15 Sarah Nelson <[log in to unmask]>:
> > Hi Eleonora,
> > The new version does handle families, it just doesn't require that
> each
> > individual belong to only one duo or trio like version 1 did.
> >
> > ~Sarah
> >
> > -----Original Message-----
> > From: Oxford Statistical Genetics Software
> [mailto:[log in to unmask]]
> > On Behalf Of Eleonora Porcu
> > Sent: Wednesday, November 13, 2013 10:06 AM
> > To: [log in to unmask]
> > Subject: [OXSTATGEN] SHAPEIT handles families
> >
> > Hi, I have a problem with SHAPEIT.
> >
> > I saw that the version v2.r727 can't handle families with two
> children, it
> > gives an error message saying that the same individual belongs to
> different
> > trios.
> > By the contrast, I don't have this problem with the version v2.r644.
> >
> > Can't newest version handle families?
> >
> > Thank you very much
> > Best
> >
> > Eleonora
> >
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