JiscMail Logo
Email discussion lists for the UK Education and Research communities

Help for CCPNMR Archives


CCPNMR Archives

CCPNMR Archives


CCPNMR@JISCMAIL.AC.UK


View:

Message:

[

First

|

Previous

|

Next

|

Last

]

By Topic:

[

First

|

Previous

|

Next

|

Last

]

By Author:

[

First

|

Previous

|

Next

|

Last

]

Font:

Proportional Font

LISTSERV Archives

LISTSERV Archives

CCPNMR Home

CCPNMR Home

CCPNMR  July 2013

CCPNMR July 2013

Options

Subscribe or Unsubscribe

Subscribe or Unsubscribe

Log In

Log In

Get Password

Get Password

Subject:

Xeasy export issue

From:

David Langelaan <[log in to unmask]>

Reply-To:

CcpNmr software mailing list <[log in to unmask]>

Date:

Wed, 31 Jul 2013 09:23:36 -0400

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (53 lines)

Hello,

I am having an issue exporting my shiftlist and noesy peak lists in 
xeasy format for future use in CYANA. There is no actual program crash, 
but the behaviour seems to be off (unless I am missing some type of 
setting).

Here is the description of what I am doing:

Using format converter I go and export in xeasy format. I first export 
the shiftlist, using the cyana format.

I then go to the peaks export menu, and export my peaklist as cyana 
format, not using the original resonance names (this way resonances are 
given the number they are assigned in the shiftlist).

At this point looking at the peak lists and shift lists there are a few 
issues.
1) For the aromatic noesy peak lists, although in my project my peaks 
are fully assigned, the carbon assignment is missing in the export lists.

2) This is a bit tricker, it seems that for my leucines, that the 
CD1/CD2 and HD1 and HD2 carbons and protons are being swapped.
As an example:

Here is peak 231 from my peak list:
231   3.492  62.361   0.889 1 T          1.534e+05  0.00e+00 a   0 2018 
2017  993 0

It is assigned to resonances 2018, 2017 and 993

The relevant resonances from my shift list:

  993   0.803 0.009 QD1  1742
  2017  62.379 0.043 CA   1803
  2018   3.487 0.010 HA   1803
  994   0.879 0.009 QD2  1742

As you can see, it looks like the indirect dimension assignment has been 
'swapped' from 994 (what it should be, and what it is in the project) to 
993. This happens for many peaks, and even for intramolecular peaks 
where both the CD and HD resonances are swapped.

Also note: My project has 2 chains in it, (protein+peptide). I do not 
see this behaviour for the peptide, only for the protein assignments.

I am running analysis 2.3, updated about a week ago.

Thanks! Let me know if there is any thing that I am setting wrong, or if 
there is some way I can help troubleshoot this.

David

Top of Message | Previous Page | Permalink

JiscMail Tools


RSS Feeds and Sharing


Advanced Options


Archives

April 2024
March 2024
February 2024
January 2024
December 2023
November 2023
October 2023
September 2023
August 2023
July 2023
June 2023
May 2023
April 2023
March 2023
February 2023
January 2023
December 2022
November 2022
October 2022
September 2022
August 2022
July 2022
June 2022
May 2022
April 2022
March 2022
February 2022
January 2022
December 2021
November 2021
October 2021
September 2021
August 2021
July 2021
June 2021
May 2021
April 2021
March 2021
February 2021
January 2021
December 2020
November 2020
October 2020
September 2020
August 2020
July 2020
June 2020
May 2020
April 2020
March 2020
February 2020
January 2020
December 2019
November 2019
October 2019
September 2019
August 2019
July 2019
June 2019
May 2019
April 2019
March 2019
February 2019
January 2019
December 2018
November 2018
October 2018
September 2018
August 2018
July 2018
June 2018
May 2018
April 2018
March 2018
February 2018
January 2018
December 2017
November 2017
October 2017
September 2017
August 2017
July 2017
June 2017
May 2017
April 2017
March 2017
February 2017
January 2017
December 2016
November 2016
October 2016
September 2016
August 2016
July 2016
June 2016
May 2016
April 2016
March 2016
February 2016
January 2016
December 2015
November 2015
October 2015
September 2015
August 2015
July 2015
June 2015
May 2015
April 2015
March 2015
February 2015
January 2015
December 2014
November 2014
October 2014
September 2014
August 2014
July 2014
June 2014
May 2014
April 2014
March 2014
February 2014
January 2014
December 2013
November 2013
October 2013
September 2013
August 2013
July 2013
June 2013
May 2013
April 2013
March 2013
February 2013
January 2013
December 2012
November 2012
October 2012
September 2012
August 2012
July 2012
June 2012
May 2012
April 2012
March 2012
February 2012
January 2012
December 2011
November 2011
October 2011
September 2011
August 2011
July 2011
June 2011
May 2011
April 2011
March 2011
February 2011
January 2011
December 2010
November 2010
October 2010
September 2010
August 2010
July 2010
June 2010
May 2010
April 2010
March 2010
February 2010
January 2010
December 2009
November 2009
October 2009
September 2009
August 2009
July 2009
June 2009
May 2009
April 2009
March 2009
February 2009
January 2009
December 2008
November 2008
October 2008
September 2008
August 2008
July 2008
June 2008
May 2008
April 2008
March 2008
February 2008
January 2008
December 2007
November 2007
October 2007
September 2007
August 2007
July 2007
June 2007
May 2007
April 2007
March 2007
February 2007
January 2007
December 2006
November 2006
October 2006
September 2006
August 2006
July 2006
June 2006
May 2006
April 2006
March 2006
February 2006
January 2006
December 2005
November 2005
October 2005
September 2005
August 2005
July 2005
June 2005
May 2005
April 2005
March 2005
February 2005
January 2005
December 2004
November 2004
October 2004
September 2004
August 2004
July 2004
June 2004
May 2004
April 2004
March 2004
February 2004
January 2004
December 2003
November 2003
October 2003
September 2003


JiscMail is a Jisc service.

View our service policies at https://www.jiscmail.ac.uk/policyandsecurity/ and Jisc's privacy policy at https://www.jisc.ac.uk/website/privacy-notice

For help and support help@jisc.ac.uk

Secured by F-Secure Anti-Virus CataList Email List Search Powered by the LISTSERV Email List Manager