Hi,

-overlap function needs to have SNPs in strictly increasing order position.

However, with the enw panel, we can well have these kind of SNPs (see 
example).

While on the manual it is said that SNPTEST issues a warning, the 
programm actually quits and not only warns.

Do we really need to go over the gen files and remove the SNPs that 
appear twice.

Best

Christian


rs9606021 17106294 T A 0.6220 0.5801 0.4563 0.5646 0.3780 0.4199 0.4563 
0.4354
rs34717444 17106294 T TA 0.6179 0.5635 0.4283 0.5462 0.3821 0.4365 
0.4283 0.4538

-- 
Christian Dina I.R. CNRS
Epidémiologie Génétique
l'institut du thorax Unité Inserm UMR 1087 / CNRS UMR 6291
IRT-UN, 8 Quai Moncousu
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