Could you make a tar.gz of the directory and upload it so I can take a
look?
http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
Dave Flitney, IT Manager
University of Oxford, FMRIB Centre
JR Hospital, Oxford OX3 9DU
T: 01865 222713 F: 01865 222717
On 1 Apr 2011, at 15:36, Iead Rezek <[log in to unmask]> wrote:
> Hi Everyone
>
> I was wondering about the segmentation fault that causes fslview to
> crash when attempting to view registered images.
>
> Here is an example from the log:
> Commands launched by ApplyXFM
>
> /export/apps/fsl/bin/flirt -in /home/scratch1/irezek/data/AD/phase2/
> controls/3T3524_Contaq_8_1++.feat/stats/zstat1.nii.gz -applyxfm -
> init /home/scratch1/irezek/data/AD/phase2/controls/3T3524_Contaq_8_1+
> +.feat/reg/example_func2highres.mat -out /home/scratch1/irezek/data/
> AD/phase2/controls/3T3524_Contaq_8_1++.feat/highres_zstat1.nii.gz -
> paddingsize 0.0 -interp trilinear -datatype float -ref /home/
> scratch1/irezek/data/AD/phase2/controls/3T3524_Contaq_8_1++.feat/reg/
> highres.nii.gz
>
> Done
>
> [irezek@brodmann39 3T3524_Contaq_8_1++.feat]$ fslview
> highres_zstat1.nii.gz
> /export/apps/fsl/bin/fslview: line 6: 19225 Segmentation fault $
> {FSLDIR}/bin/fslview_bin $@
>
> If, however, all files reside in one directory, there will be no
> problem:
>
> [3T3524_Contaq_8_1++.feat]$ mkdir tmp
> [3T3524_Contaq_8_1++.feat]$ cd tmp
> [tmp]$ cp ../stats/zstat1.nii.gz .
> [tmp]$ cp ../reg/highres.nii.gz .
> [tmp]$ cp ../reg/example_func2highres.mat .
> [tmp]$ flirt -in zstat1.nii.gz -applyxfm -init
> example_func2highres.mat -out highres_zstat1 -ref highres.nii.gz
> [tmp]$ fslview highres_zstat1.nii.gz
>
>
> Am I doing something wrong, here?
>
> Thanks for your help
>
> Iead
> ----
> Iead Rezek, PhD
> Non-Clinical Lecturer
> Computational, Cognitive, and Clinical Neuroscience (C3NL) Laboratory
> Imperial College London
>
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