Dear Peg,
OK, there is a bug in the code you have. Since it is no longer in the code
in our repositories, it is possible that it has already been fixed. Try
updating your release:
- Open Analysis
- Make a note of the CcpNmr Anlaysis Version and Release (third line)
and the time the distributionwas created (fourth line) in case this does
not work.
- Go into M:Project:Updates
- If there are any uninstalled patches, press [Select All], and then
[Install Selected]. This should install all current patches (assuming
you have write permission to the place where the Analysis release
lives).
- If this does not an error message, then try again if the program now
works.
Please let us know whether it works or not.
Yours,
Rasmus
---------------------------------------------------------------------------
Dr. Rasmus H. Fogh Email: [log in to unmask]
Dept. of Biochemistry, University of Cambridge,
80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX (01223)766002
On Tue, 15 Mar 2011, Peg Nyon wrote:
> Dear Rasmus,
>
> Thank you for your quick response.
>
> This is the output from the command line:
>
> Model read finished. Duration 1.37403202057
> Model validity check skipped
> CcpNmr Analysis Version 2.2. Release 0 (Copyright 2003-2010 CCPN)
> Distribution created Mon Oct 4 14:03:29 2010
>
> If you use CcpNmr Analysis, please quote the following reference:
>
> Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne
> Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides
> and Ernest D. Laue (2005). The CCPN Data Model for NMR Spectroscopy:
> Development of a Software Pipeline. Proteins 59, 687 - 696.
>
> A copy of the in-program documentation is located at:
> http://www.ccpn.ac.uk/documentation
>
> For how-tos and FAQs visit the CCPN wiki site at:
> http://www.ccpn.ac.uk/wiki
>
> To report bugs use the bug tracker at:
> http://www.ccpn.ac.uk/bugs
>
> For help and support join the mailing list at:
> http://www.ccpn.ac.uk/support
>
> For Python API documentation, tutorials and CCPN web applications visit:
> http://www.ccpn.ac.uk/
>
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 103]> with path
> /d/bg1/u/ubcg68c/topspin/K154N_280910/293K_K154N/summed_all3.spc
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 75]> with path
> /d/bg1/u/ubcg68c/topspin/k154n/25_degree/4.ucsf
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 92]> with path
> /d/bg1/u/ubcg68c/topspin/K154N_280910/30.fid/30.ucsf
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 59]> with path /d/bg1/u/ubcg68c/topspin/k154n/34/34.ucsf
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 79]> with path
> /d/bg1/u/ubcg68c/topspin/k154n/25_degree/28.ucsf
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 107]> with path
> /d/bg1/u/ubcg68c/topspin/K154N_280910/288K_WT/WT_288K_summed_all4.spc
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 66]> with path
> /d/bg1/u/ubcg68c/topspin/k154n/25_wt/25_wt.ucsf
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 102]> with path
> /d/bg1/u/ubcg68c/topspin/K154N_280910/288K_K154N/summed_all4.spc
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 77]> with path
> /d/bg1/u/ubcg68c/topspin/k154n/25_degree/13.ucsf
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 108]> with path
> /d/bg1/u/ubcg68c/topspin/ttai_011110/summed_last2/summed_eq_5.spc
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 89]> with path
> /d/bg1/u/ubcg68c/topspin/K154N_280910/9.fid/9_98.ucsf
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 93]> with path
> /d/bg1/u/ubcg68c/topspin/K154N_280910/32.fid/32.ucsf
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 91]> with path
> /d/bg1/u/ubcg68c/topspin/K154N_280910/11.fid/11_98.ucsf
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 90]> with path
> /d/bg1/u/ubcg68c/topspin/K154N_280910/9.fid/9_100.ucsf
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 58]> with path
> /d/bg1/u/ubcg68c/topspin/k154n/1003/1003.ucsf
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 76]> with path
> /d/bg1/u/ubcg68c/topspin/k154n/25_degree/6.ucsf
> deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix
> ['backb_assign', 106]> with path
> /d/bg1/u/ubcg68c/topspin/K154N_280910/293K_WT/WT_293K_summed_all3.spc
> Traceback (most recent call last):
> File
> "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/AnalysisGui.py", line
> 226, in <module>
> main(projectDir, max_size, glDirect)
> File
> "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/AnalysisGui.py", line
> 111, in main
> top.initProject(project)
> File
> "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/AnalysisPopup.py",
> line 1544, in initProject
> Analysis.initProject(self, project)
> File "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/Analysis.py",
> line 291, in initProject
> self.initSpectra()
> File "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/Analysis.py",
> line 1066, in initSpectra
> self.initExperiment(experiment)
> File "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/Analysis.py",
> line 1029, in initExperiment
> ExperimentBasic.initExpTransfers(experiment, overwrite=False)
> File
> "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/ExperimentBasic.py",
> line 450, in initExpTransfers
> for expGraph in experiment.refExperiment.nmrExpProtoType.expGraphs:
> AttributeError: 'RefExperiment' object has no attribute 'nmrExpProtoType'
>
> Best wishes,
> Peg
>
>
> On 15/03/2011 14:46, Rasmus Fogh wrote:
> Dear Peg,
>
> I am afraid we need a little more information here.
>
> Recently we prefer people to send their error messages via
> the automatic bug reporting system. That will automatically
> gather most of the information we need, and fit nicely into
> our procedures.
>
> If you prefer sending a mail direct, you should join
> [log in to unmask] and send it there - that is the project
> discussion group, where other users can also help. ccpn-dev
> is intended for discussion among developers on future program
> developments.
>
> Anyway, when you get an error message an click the suitable
> OK buttons, you will get an error output to the command line.
> For a direct mail you should copy what is on the command line
> and put it in your mail. Copy all the way back till you are
> sure that the output reflects correct working of the program
> - sometimes there is important information before the final
> error trace, or there may be previous errors that were the
> real cause of the problem. If in doubt just copy the entire
> command window - electrons are cheap.
>
> As for your actual problem, it looks like there may be a bug
> in a recent program change. If you send me the error trace,
> and tell me what you were doing when you got it, I can zero
> in on the line with the problem and hopefully come up with a
> fix quickly.
>
> Yours,
>
> Rasmus
>
> ---------------------------------------------------------------------------
> Dr. Rasmus H. Fogh Email:
> [log in to unmask]
> Dept. of Biochemistry, University of Cambridge,
> 80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX
> (01223)766002
>
> On Tue, 15 Mar 2011, Peg Nyon wrote:
>
> Hi there,
>
> My name is Peg, postdoc from Birkbeck College,
> Lonon. I'm currently using CcpNmr Analysis
> version 2.2.0. I have a problem to open my
> project. An error message appears: Project
> invalid, please quit, fix and re-start:
> AttributeError: 'RefExperiment' object has no
> attribute 'nmrExpProtoType'.
>
> What can i do to fix the error of the project?
>
> I have a back-up of my project
>
> Best wishes,
> Peg
>
>
>
>
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