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Dear Peg, OK, there is a bug in the code you have. Since it is no longer in the code in our repositories, it is possible that it has already been fixed. Try updating your release: - Open Analysis - Make a note of the CcpNmr Anlaysis Version and Release (third line) and the time the distributionwas created (fourth line) in case this does not work. - Go into M:Project:Updates - If there are any uninstalled patches, press [Select All], and then [Install Selected]. This should install all current patches (assuming you have write permission to the place where the Analysis release lives). - If this does not an error message, then try again if the program now works. Please let us know whether it works or not. Yours, Rasmus --------------------------------------------------------------------------- Dr. Rasmus H. Fogh Email: [log in to unmask] Dept. of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX (01223)766002 On Tue, 15 Mar 2011, Peg Nyon wrote: > Dear Rasmus, > > Thank you for your quick response. > > This is the output from the command line: > > Model read finished. Duration 1.37403202057 > Model validity check skipped > CcpNmr Analysis Version 2.2. Release 0 (Copyright 2003-2010 CCPN) > Distribution created Mon Oct 4 14:03:29 2010 > > If you use CcpNmr Analysis, please quote the following reference: > > Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne > Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides > and Ernest D. Laue (2005). The CCPN Data Model for NMR Spectroscopy: > Development of a Software Pipeline. Proteins 59, 687 - 696. > > A copy of the in-program documentation is located at: > http://www.ccpn.ac.uk/documentation > > For how-tos and FAQs visit the CCPN wiki site at: > http://www.ccpn.ac.uk/wiki > > To report bugs use the bug tracker at: > http://www.ccpn.ac.uk/bugs > > For help and support join the mailing list at: > http://www.ccpn.ac.uk/support > > For Python API documentation, tutorials and CCPN web applications visit: > http://www.ccpn.ac.uk/ > > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 103]> with path > /d/bg1/u/ubcg68c/topspin/K154N_280910/293K_K154N/summed_all3.spc > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 75]> with path > /d/bg1/u/ubcg68c/topspin/k154n/25_degree/4.ucsf > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 92]> with path > /d/bg1/u/ubcg68c/topspin/K154N_280910/30.fid/30.ucsf > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 59]> with path /d/bg1/u/ubcg68c/topspin/k154n/34/34.ucsf > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 79]> with path > /d/bg1/u/ubcg68c/topspin/k154n/25_degree/28.ucsf > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 107]> with path > /d/bg1/u/ubcg68c/topspin/K154N_280910/288K_WT/WT_288K_summed_all4.spc > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 66]> with path > /d/bg1/u/ubcg68c/topspin/k154n/25_wt/25_wt.ucsf > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 102]> with path > /d/bg1/u/ubcg68c/topspin/K154N_280910/288K_K154N/summed_all4.spc > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 77]> with path > /d/bg1/u/ubcg68c/topspin/k154n/25_degree/13.ucsf > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 108]> with path > /d/bg1/u/ubcg68c/topspin/ttai_011110/summed_last2/summed_eq_5.spc > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 89]> with path > /d/bg1/u/ubcg68c/topspin/K154N_280910/9.fid/9_98.ucsf > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 93]> with path > /d/bg1/u/ubcg68c/topspin/K154N_280910/32.fid/32.ucsf > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 91]> with path > /d/bg1/u/ubcg68c/topspin/K154N_280910/11.fid/11_98.ucsf > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 90]> with path > /d/bg1/u/ubcg68c/topspin/K154N_280910/9.fid/9_100.ucsf > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 58]> with path > /d/bg1/u/ubcg68c/topspin/k154n/1003/1003.ucsf > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 76]> with path > /d/bg1/u/ubcg68c/topspin/k154n/25_degree/6.ucsf > deleting dataStore <ccp.general.DataLocation.BlockedBinaryMatrix > ['backb_assign', 106]> with path > /d/bg1/u/ubcg68c/topspin/K154N_280910/293K_WT/WT_293K_summed_all3.spc > Traceback (most recent call last): > File > "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/AnalysisGui.py", line > 226, in <module> > main(projectDir, max_size, glDirect) > File > "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/AnalysisGui.py", line > 111, in main > top.initProject(project) > File > "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/AnalysisPopup.py", > line 1544, in initProject > Analysis.initProject(self, project) > File "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/Analysis.py", > line 291, in initProject > self.initSpectra() > File "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/Analysis.py", > line 1066, in initSpectra > self.initExperiment(experiment) > File "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/Analysis.py", > line 1029, in initExperiment > ExperimentBasic.initExpTransfers(experiment, overwrite=False) > File > "/usr/local/ccpnmr/ccpnmr2.2/python/ccpnmr/analysis/core/ExperimentBasic.py", > line 450, in initExpTransfers > for expGraph in experiment.refExperiment.nmrExpProtoType.expGraphs: > AttributeError: 'RefExperiment' object has no attribute 'nmrExpProtoType' > > Best wishes, > Peg > > > On 15/03/2011 14:46, Rasmus Fogh wrote: > Dear Peg, > > I am afraid we need a little more information here. > > Recently we prefer people to send their error messages via > the automatic bug reporting system. That will automatically > gather most of the information we need, and fit nicely into > our procedures. > > If you prefer sending a mail direct, you should join > [log in to unmask] and send it there - that is the project > discussion group, where other users can also help. ccpn-dev > is intended for discussion among developers on future program > developments. > > Anyway, when you get an error message an click the suitable > OK buttons, you will get an error output to the command line. > For a direct mail you should copy what is on the command line > and put it in your mail. Copy all the way back till you are > sure that the output reflects correct working of the program > - sometimes there is important information before the final > error trace, or there may be previous errors that were the > real cause of the problem. If in doubt just copy the entire > command window - electrons are cheap. > > As for your actual problem, it looks like there may be a bug > in a recent program change. If you send me the error trace, > and tell me what you were doing when you got it, I can zero > in on the line with the problem and hopefully come up with a > fix quickly. > > Yours, > > Rasmus > > --------------------------------------------------------------------------- > Dr. Rasmus H. Fogh Email: > [log in to unmask] > Dept. of Biochemistry, University of Cambridge, > 80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX > (01223)766002 > > On Tue, 15 Mar 2011, Peg Nyon wrote: > > Hi there, > > My name is Peg, postdoc from Birkbeck College, > Lonon. I'm currently using CcpNmr Analysis > version 2.2.0. I have a problem to open my > project. An error message appears: Project > invalid, please quit, fix and re-start: > AttributeError: 'RefExperiment' object has no > attribute 'nmrExpProtoType'. > > What can i do to fix the error of the project? > > I have a back-up of my project > > Best wishes, > Peg > > > >