Hi Annouchka,
from the error message, it would seem that the only *_FA image found was the all_FA one, when it should be all the native FA images in the FA directory. This suggests you might not have run the command from the right, top working TBSS directory but presumably from the stats directory instead...
Hope this helps,
Gwenaelle
> De: Annouchka Van Impe <[log in to unmask]>
> Objet: [FSL] error tbss_non_FA
> À: [log in to unmask]
> Date: Mardi 11 janvier 2011, 10h23
> Dear tbss users,
>
> When running the tbss_non_FA script (FSL 4.1.6) on my L1
> data, I get the following error:
>
> “using pre-chosen registration target: target
> upsampling alternative images into standard space
> all
> ** ERROR (nifti_image_read): failed to find header file for
> '../L1/all'
> ** ERROR: nifti_image_open(../L1/all): bad header info
> Error: failed to open file ../L1/all
> ERROR: Could not open image ../L1/all
> Image Exception : #22 :: Failed to read volume ../L1/all
> terminate called after throwing an instance of
> 'RBD_COMMON::BaseException'
> Aborted
> mean
> ** ERROR (nifti_image_read): failed to find header file for
> '../L1/mean'
> ** ERROR: nifti_image_open(../L1/mean): bad header info
> Error: failed to open file ../L1/mean
> ERROR: Could not open image ../L1/mean
> Image Exception : #22 :: Failed to read volume ../L1/mean
> terminate called after throwing an instance of
> 'RBD_COMMON::BaseException'"
>
>
> Nevertheless, the script creates the
> ‘to_target_L1.nii.gz’ images in the FA folder and then
> it gives a new error:
>
> "merging all upsampled L1 images into single 4D image
> terminate called after throwing an instance of
> 'std::bad_alloc'
> what(): std::bad_alloc
> Aborted"
>
> Any suggestions on how to fix this problem would be greatly
> appreciated.
>
> Kind regards,
>
> Annouchka
> Motor Control Laboratory
> Department of Biomedical Kinesiology
> K.U.Leuven
> Tervuursevest 101
> 3001 Heverlee, Belgium
--------------------------------------------------------------------
Gwenaëlle Douaud, PhD
FMRIB Centre, University of Oxford
John Radcliffe Hospital, Headington OX3 9DU Oxford UK
Tel: +44 (0) 1865 222 523 Fax: +44 (0) 1865 222 717
www.fmrib.ox.ac.uk/~douaud
--------------------------------------------------------------------
|