I am trying eddy_correct and rotate_bvecs for the first time. Perhaps I do not understand the syntax. This is the syntax:
rotate_bvecs <4doutput>.ecclog <bvecs>
and I typed this:
rotate_bvecs sb24.ecclog copy.bvec
where copy.bvec is a copy of the original bvec file
I get this result:
line 21: syntax error near unexpected token 'done'
I cannot find any other documentation on how to use rotate_bvecs. Please point it out to me or give me an example. Thanks.
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