Hi,
here's the output you requested for the files.
thanks so much for your help.
aj
>
> Hi!
>
>
>
> Seems that your eddy correct was a little hungry ;-).
>
> What does it say when you do
>
> fslhd <your_data_file_before_eddy_correct>.nii.gz
>
> fslhd <your_data_file_after_eddy_correct>.nii.gz
>
>
>
> Best,
>
> Markus
>
>
>
>
>
>
>
> 2010/1/7 Adil Javed <[log in to unmask]>
>
>
>
> > Hi,
>
> > I am trying to analyze DTI data to get the FA and MD
> images by running
>
> > DTIFIT. After running the DTIFIT I do get FA,
> MD, etc images but when I
>
> > look at them in FSL view, all these images have
> intensities of 0. There are
>
> > no images to look at. I even played around with
> min/max itensity from 0-1 or
>
> > -1 to 1 and again nothing. I've tried other
> programs to analyze the same
>
> > data, such as DTI tool in MedINRIA, and it works fine
> there.
>
> >
>
> >
>
> >
>
> > also after I run Eddy current correction, the
> generated file has only 1
>
> > volume which looks like b0 file and the remaining 32
> volumes of various
>
> > directions are gone?
>
> >
>
> > any ideas?
>
> >
>
> > Thanks for your help,
>
> >
>
> > aj
>
> >
>
>
>
>
>
>
>
> --
>
>
>
>
>
> Dr. med. Markus Gschwind, M.D.
>
> Laboratory for Neurology and Imaging of Cognition - Dept of
> Neurosciences
>
> University Medical Center (CMU)
>
> 1, Michel-Servet
>
> CH-1211 GENEVA - Switzerland
>
>
>
> Tel 0041 (0) 22 379 5324
>
> Fax 0041 (0) 22 379 5402
>
> email: [log in to unmask]
>
> http://labnic.unige..ch
>
>
>
>
>
>
>
>
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