Hi,
I am trying to analyze DTI data to get the FA and MD images by running DTIFIT. After running the DTIFIT I do get FA, MD, etc images but when I look at them in FSL view, all these images have intensities of 0. There are no images to look at. I even played around with min/max itensity from 0-1 or -1 to 1 and again nothing. I've tried other programs to analyze the same data, such as DTI tool in MedINRIA, and it works fine there.
also after I run Eddy current correction, the generated file has only 1 volume which looks like b0 file and the remaining 32 volumes of various directions are gone?
any ideas?
Thanks for your help,
aj
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