Hi!
Sure, you can.
Make sure that the mask is binary and that it is in the good
dimensions by fslview + add overlay.
If it is a cortical blob you want to take the mask from then it might
be necessary to grow it into the white matter first.
Best,
Markus
2009/11/23 shantanu ghosh <[log in to unmask]>:
> Dear FSL users,
>
> can i use SPM.mat generated by SPM2/8 as a mask for constraining fibre
> tracking in FSL? Any help is appreciated. Thanks in advance.
>
> shantanu
>
> ________________________________
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--
Dr. med. Markus Gschwind, M.D.
Laboratory for Neurology and Imaging of Cognition - Dept of Neurosciences
University Medical Center (CMU)
1, Michel-Servet
CH-1211 GENEVA - Switzerland
Tel 0041 (0) 22 379 5324
Fax 0041 (0) 22 379 5402
email: [log in to unmask]
http://labnic.unige.ch
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