Thanks, Steve, that makes sense.
I also have a question, in my current understanding, TBSS will skeletonise
FA data and then align all the skeletons, this is one of the advantages of
using TBSS, that it uses the skeletons to attain a better registration.
However, this alignment is only applied to the skeletons, that is, NOT
applied to the full FA maps at any point. Am I correct in this?
Thanks!
On 7/23/09 1:24 AM, "Steve Smith" <[log in to unmask]> wrote:
> Er....because you didn't set any output options....you need to choose
> one or more of
> -T
> --T2
> -x
> -c
> etc.
> Cheers.
>
>
> On 22 Jul 2009, at 21:28, John Kuster wrote:
>
>> Dear FSLers,
>>
>> If anyone could tell me why I am getting an aborted command, I would
>> really appreciate it! I am not sure why it says no output options
>> selected,
>>
>> Thanks in advance,
>>
>> Jake
>>
>>
>> striatum:stats] (nmr-std-env) randomise -i all_FA_skeletonised -o
>> tbss_msk
>> -m mean_FA_skeleton_mask_ROI_masked -d design.mat -t design.con -n
>> 5000
>> randomise options: -i all_FA_skeletonised -o tbss_msk -m
>> mean_FA_skeleton_mask_ROI_masked -d design.mat -t design.con -n 5000
>> Loading Data: ***********************
>> Data loaded
>> 1.14407e+06 permutations required for exhaustive test of t-test 1
>> Doing 5000 random permutations
>> Warning! No output options selected. Outputing raw tstat only
>> Starting permutation 1 (Unpermuted data)
>> 1.14407e+06 permutations required for exhaustive test of t-test 2
>> Doing 5000 random permutations
>> Warning! No output options selected. Outputing raw tstat only
>> Starting permutation 1 (Unpermuted data)
>> Finished, exiting.
>>
>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ---------------------------------------------------------------------------
>
>
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