Dear Robert,
Could you send me the PDB file, as well as the sequence (one- or
three-letter codes)? Then I could try out a few things.
Also, what happens exactly when 'the gaps in the pdb file creates
mismatches in the target chain'?
Yours,
Rasmus
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Dr. Rasmus H. Fogh Email: [log in to unmask]
Dept. of Biochemistry, University of Cambridge,
80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX (01223)766002
On Wed, 18 Jun 2008, Robert Dagil wrote:
> Hello CCPN-crew and others
>
> I'm very interested in importing a pdb-file through analysis, so that I can
> use these distances for noe assignment. The only problem is, that the
> pdb-file containing a crystal structure has segments missing. The start-end
> numbering mathces my sequence, but two regions in the middle are not
> present. When importing the pdb-file the gaps in the pdb file creates miss
> matches in the target chain. Any idea how to tweak the file so that analysis
> skips the missing regions?
>
> Kind regards
>
> Robert Dagil
> University of Copenhagen
>
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