Hi - yes, sorry target->MNI-space registration in tbss_3 will work
better if you change reference to the MNI152 in it to the FMRIB58_FA_1mm
This is changed in the new upcoming version for just this reason.
Cheers.
On 23 Apr 2008, at 22:04, Conrad Rockel wrote:
> regarding post 017289
>
> After a bit more tinkering, I found that nothing seems to want to
> register
> (with flirt)to the MNI152_T1 scan! However, individual
> registrations were
> successful with its skull-stripped counterpart, as well as with the
> FA58.
> The smaller data set I ran as a test with the '-T' option has not
> finished
> yet to see if successful.
>
> Since I am dealing with a pediatric population, I wanted to use one
> of our
> own subjects. Could something be wrong with my MNI152? Should I
> edit the
> tbss_3 script to hardwire a different image (eg the FA58, which
> could be
> the same as using '-T', or the skull-stripped MNI152) for the
> purposes of
> moving the target into standard space?
>
> Cheers,
>
> Conrad
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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