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Hi - yes, sorry target->MNI-space registration in tbss_3 will work better if you change reference to the MNI152 in it to the FMRIB58_FA_1mm This is changed in the new upcoming version for just this reason. Cheers. On 23 Apr 2008, at 22:04, Conrad Rockel wrote: > regarding post 017289 > > After a bit more tinkering, I found that nothing seems to want to > register > (with flirt)to the MNI152_T1 scan! However, individual > registrations were > successful with its skull-stripped counterpart, as well as with the > FA58. > The smaller data set I ran as a test with the '-T' option has not > finished > yet to see if successful. > > Since I am dealing with a pediatric population, I wanted to use one > of our > own subjects. Could something be wrong with my MNI152? Should I > edit the > tbss_3 script to hardwire a different image (eg the FA58, which > could be > the same as using '-T', or the skull-stripped MNI152) for the > purposes of > moving the target into standard space? > > Cheers, > > Conrad > --------------------------------------------------------------------------- Stephen M. Smith, Professor of Biomedical Engineering Associate Director, Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK +44 (0) 1865 222726 (fax 222717) [log in to unmask] http://www.fmrib.ox.ac.uk/~steve ---------------------------------------------------------------------------