Hi Micheal!
Thank you for your efforts. Unfortunately this update did not fix the
problems at least for me. Please see attached log and the output from FEEDS
below.
Greetings,
Antti
--
Antti Korvenoja
Biomedicum Helsinki, Radiology
P.O. Box 700, 00029 HUS
Finland
tel: +358-9-47171786 : mobile: +358-40-7498469
antti@cortex:~$ fsl-selftest
Create temporary working directory
Using /tmp/fsl-selftest.V12583 as working directory
FSL Evaluation and Example Data Suite v4.0
start time = Wed Nov 7 13:54:54 EET 2007
hostname = cortex
os = Linux cortex 2.6.22-2-amd64 #1 SMP Thu Aug 30 23:43:59 UTC 2007 x86_64
GNU/Linux
/bin/rm -rf /tmp/fsl-selftest.V12583/results ; mkdir
/tmp/fsl-selftest.V12583/results
Starting PRELUDE & FUGUE at Wed Nov 7 13:54:54 EET 2007
No output image created
Warning - test failed!
No output image created
Warning - test failed!
Starting SUSAN at Wed Nov 7 13:54:54 EET 2007
No output image created
Warning - test failed!
Starting SIENAX (including testing BET and FLIRT and FAST) at Wed Nov 7
13:54:55 EET 2007
checking error on BET:
No output image created
Warning - test failed!
checking error on FLIRT:
No output image created
Warning - test failed!
checking error on FAST:
checking error on single-image binary segmentation:
No output image created
Warning - test failed!
checking error on partial volume images:
No output image created
Warning - test failed!
No output image created
Warning - test failed!
No output image created
Warning - test failed!
checking error on SIENAX volume outputs:
% error = 46.4
Warning - test failed!
% error = 2.41
Warning - test failed!
% error = 58.91
Warning - test failed!
% error = 41.29
Warning - test failed!
% error = 100.21
Warning - test failed!
Starting BET2 at Wed Nov 7 13:54:57 EET 2007
checking error on T1 brain extraction:
No output image created
Warning - test failed!
checking error on skull and scalp surfaces:
No output image created
Warning - test failed!
No output image created
Warning - test failed!
No output image created
Warning - test failed!
Starting FEAT at Wed Nov 7 13:54:57 EET 2007
checking error on filtered functional data:
No output image created
Warning - test failed!
checking error on raw Z stat images:
No output image created
Warning - test failed!
No output image created
Warning - test failed!
No output image created
Warning - test failed!
checking error on thresholded Z stat images:
No output image created
Warning - test failed!
No output image created
Warning - test failed!
No output image created
Warning - test failed!
checking error on position of largest cluster of Talairached zfstat1:
couldn't open
"/tmp/fsl-selftest.V12583/results/fmri.feat/cluster_zfstat1_std.txt": no
such file or directory
while executing
"open ${FEEDSDIR}/results/fmri.feat/cluster_zfstat1_std.txt r "
invoked from within
"if { $feeds(feat) } {
puts "\nStarting FEAT at [ exec date ]"
# fix FEAT setup file to use FEEDSDIR and FSLDIR
fsl:exec "cp ${FEEDSDIR}/data/fmri.fe..."
(file "./RUN" line 285)
Done. Leaving results in /tmp/fsl-selftest.V12583
Lainaus Michael Hanke <[log in to unmask]>:
> Hi,
>
> On Mon, Nov 05, 2007 at 09:33:44PM +0100, Michael Hanke wrote:
> > Hi,
> >
> > On Mon, Nov 05, 2007 at 02:55:08PM +0100, Michael Hanke wrote:
> > <snip>
> >
> > > I'm affraid that fixing this bug might take a while, as I'm
> currently
> > > rather clueless where to start looking. Obviously something changed
> > > between etch and lenny (identical versions of FSL and libnifti give
> > > different behaviour), but given that A LOT of software changed, it
> is
> > > quite difficult...
> > With the kind help of Yaroslav Halchenko I was able to patch
> libniftiio
> > and fix an invalid memory read. I'm testing the patch tomorrow and
> will
> > provide an update when this is successful.
> I just released version 0.6-2 of the nifticlibs packages. It includes
> two fixes that hopefully address all recently reported problems. Please
> update your package installations and tell me whether it works for you.
>
> Please note, that no updated FSL package is available (or necessary) as
> the package makes use of the shared-lib version of the nifti libs.
>
> Cheers,
>
> Michael
>
>
> --
> GPG key: 1024D/3144BE0F Michael Hanke
> http://apsy.gse.uni-magdeburg.de/hanke
> ICQ: 48230050
>
>
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