Hi!
Now I got it! I thought that the niftilibs in lenny repository were
patched for the recently discoverd bug but obviously they were not. I
had to install niftilib from unstable in order to be able to build FSL.
Thank you for all your help,
Antti
Michael Hanke wrote:
> Hi,
>
> On Mon, Nov 12, 2007 at 06:47:03PM +0200, Antti Korvenoja wrote:
>
>> Hi!
>>
>> I compiled fsl from Debian lenny source package and now FEEDS tests are
>> passed! I'm puzzled. Why the binaries did not work?
>>
> That is great!
>
> As lenny is not yet released there are constantly changing library
> versions (+ bugs and their fixes). The current lenny packages are built
> on 9th Sept. I will trigger a rebuilt of lenny and sid packages so other
> do not run into the same problems.
>
> On our systems I probably use a package built that I've compiled later for
> testing purposes and therefore could not reproduce this problem.
>
>
> Thanks for your patience,
>
>
> Michael
>
>
>> Lainaus Antti Korvenoja <[log in to unmask]>:
>>
>>
>>> Hi!
>>>
>>> I removed fsl and fsl-feeds from the system and downloaded and installed
>>> them again. Unfortunately the situation is, however, as before. I do get
>>> error messages from other data than FEEDS as well.
>>>
>>> Thank you,
>>>
>>> Antti
>>>
>>> --
>>> Antti Korvenoja
>>> Biomedicum Helsinki, Radiology
>>> P.O. Box 700, 00029 HUS
>>> Finland
>>>
>>> tel: +358-9-47171786 : mobile: +358-40-7498469
>>>
>>>
>>> Lainaus Michael Hanke <[log in to unmask]>:
>>>
>>>
>>>> Hi Antti,
>>>>
>>>> On Fri, Nov 09, 2007 at 12:46:46PM +0200, Antti Korvenoja wrote:
>>>>
>>>>> Hi,
>>>>> Both on data from /usr/share/fsl-feeds/data and my own data (in
>>>>>
>>> ANALYZE
>>>
>>>> and
>>>>
>>>>> Nifti formats) I get the same error message, though thereafter
>>>>>
>>> follows
>>>
>>>>> normal output of header information:
>>>>>
>>>> <snip>
>>>>
>>>>
>>>>> When viewing the files in /usr/share/fsl-feeds/data epi.nii.gz shows
>>>>>
>>>> some
>>>>
>>>>> sensible images. The rest of the imagegiles seem to be corrupted. I
>>>>>
>>>> see
>>>>
>>>>> image volumes consisting of (black-gray-white) streaks. My own data
>>>>>
>>>> shows up
>>>>
>>>>> uncorrupted (thankfully).
>>>>>
>>>> Ok, if one file works and all the others do not, it is unlikely to be
>>>>
>>> a
>>>
>>>> general bug. Could you please re-installed the 'fsl-feeds' package.
>>>>
>>> This
>>>
>>>> package is identical for ALL distributions, so if the data works on
>>>> Ubuntu it should also work on Debian.
>>>>
>>>>
>>>> Cheers,
>>>>
>>>> Michael
>>>>
>>>> --
>>>> GPG key: 1024D/3144BE0F Michael Hanke
>>>> http://apsy.gse.uni-magdeburg.de/hanke
>>>> ICQ: 48230050
>>>>
>>>>
>>>>
>>>
>
>
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