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Hi! Now I got it! I thought that the niftilibs in lenny repository were patched for the recently discoverd bug but obviously they were not. I had to install niftilib from unstable in order to be able to build FSL. Thank you for all your help, Antti Michael Hanke wrote: > Hi, > > On Mon, Nov 12, 2007 at 06:47:03PM +0200, Antti Korvenoja wrote: > >> Hi! >> >> I compiled fsl from Debian lenny source package and now FEEDS tests are >> passed! I'm puzzled. Why the binaries did not work? >> > That is great! > > As lenny is not yet released there are constantly changing library > versions (+ bugs and their fixes). The current lenny packages are built > on 9th Sept. I will trigger a rebuilt of lenny and sid packages so other > do not run into the same problems. > > On our systems I probably use a package built that I've compiled later for > testing purposes and therefore could not reproduce this problem. > > > Thanks for your patience, > > > Michael > > >> Lainaus Antti Korvenoja <[log in to unmask]>: >> >> >>> Hi! >>> >>> I removed fsl and fsl-feeds from the system and downloaded and installed >>> them again. Unfortunately the situation is, however, as before. I do get >>> error messages from other data than FEEDS as well. >>> >>> Thank you, >>> >>> Antti >>> >>> -- >>> Antti Korvenoja >>> Biomedicum Helsinki, Radiology >>> P.O. Box 700, 00029 HUS >>> Finland >>> >>> tel: +358-9-47171786 : mobile: +358-40-7498469 >>> >>> >>> Lainaus Michael Hanke <[log in to unmask]>: >>> >>> >>>> Hi Antti, >>>> >>>> On Fri, Nov 09, 2007 at 12:46:46PM +0200, Antti Korvenoja wrote: >>>> >>>>> Hi, >>>>> Both on data from /usr/share/fsl-feeds/data and my own data (in >>>>> >>> ANALYZE >>> >>>> and >>>> >>>>> Nifti formats) I get the same error message, though thereafter >>>>> >>> follows >>> >>>>> normal output of header information: >>>>> >>>> <snip> >>>> >>>> >>>>> When viewing the files in /usr/share/fsl-feeds/data epi.nii.gz shows >>>>> >>>> some >>>> >>>>> sensible images. The rest of the imagegiles seem to be corrupted. I >>>>> >>>> see >>>> >>>>> image volumes consisting of (black-gray-white) streaks. My own data >>>>> >>>> shows up >>>> >>>>> uncorrupted (thankfully). >>>>> >>>> Ok, if one file works and all the others do not, it is unlikely to be >>>> >>> a >>> >>>> general bug. Could you please re-installed the 'fsl-feeds' package. >>>> >>> This >>> >>>> package is identical for ALL distributions, so if the data works on >>>> Ubuntu it should also work on Debian. >>>> >>>> >>>> Cheers, >>>> >>>> Michael >>>> >>>> -- >>>> GPG key: 1024D/3144BE0F Michael Hanke >>>> http://apsy.gse.uni-magdeburg.de/hanke >>>> ICQ: 48230050 >>>> >>>> >>>> >>> > >