Dear FSL experts,
I will use both tbss and bedpostX to analyze my images dti images.
I would like to use the tbss_2_reg -n option, but this option also takes
a lot of time. I therefore need to run this analysis in parallell, and
have found out that I have admission to a PBS (public batch system).
For the tbss_2_reg, it says in the FSL webpage that:
"Ask your system administrator to edit $FSLDIR/bin/tbss_2_reg and
posslibly edit the two lines starting with the one testing for
"SGE_ROOT", in order to make the necessary submission to your batch system."
My system administrator says that he could not find the lines starting
with "SGE_ROOT", and also wants to know how to make the necessary
submission to the batch system. Is there an easy way to do this?
In the webpage, it also says what to do for parallelising bedpost. Is
this also valid if we have a PBS and not an SGE batch system?
Hope to get some answers!
Best regards, Live Eikenes.
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