I have been attempting to create a mask file in MRIcro to be used in
ProbTrack, specifically Connectivity-Based Seed Clasification. The masks
are saved as ANALYZE (image_1.img/hdr) in MRIcro and I have been
attempting to convert them to FSL NIFTI using AVWCHFILETYPE but have run
into problems. My input and output are listed below:
avwchfiletype NIFTI_GZ image_1
This program has not been compiled for this data type
The datatype is 4 (INT16) and bitpix is 16
I would appreciate any advice you can give me.
Perhaps there is a better way to creating seed masks which doesn't involve
converting between different file types.
Perhaps I am doing something wrong with the avwchfiletype command.
Thank you so much
Christi Perkins
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