Hi - read my email ;-)
unset SGE_ROOT _IN_ the feat script.
cheers.
On 22 Sep 2007, at 12:27, Neil Killeen wrote:
> Steve, Christian
>
> I want to do this *only* for feat.
>
> Steve if I unset SGE_ROOT that disables the queue for all
> applications.
>
> Christian the $FSLDIR/tcl/fsl_exec.tcl script looks generic to me,
> not for feat alone ?
> Does it impact other GUI (Tcl) intitiated applications (I believe
> bedpostx and tbss_2_reg call
> fsl_sub directly and presumably don't depend on this).
>
> cheers
> Neil
>
>
> On Fri, 21 Sep 2007 08:42:49 +0100, Christian F. Beckmann
> <[log in to unmask]>
> wrote:
>
>> Hi,
>>
>> it's in fsl_exec.tcl in $FSLDIR/tcl
>> cheers
>> Christian
>>
>>
>> _______________________________________________
>> Christian F. Beckmann, DPhil
>> Senior Lecturer, Clinical Neuroscience Department
>> Division of Neuroscience and Mental Health
>> Imperial College London
>> Hammersmith Campus, Rm 247, Cyclotron Bldg
>> Du Cane Road, London W12 0NN, UK
>> Tel.: +44 (0) 208 383 8598 --- Fax: +44 (0) 208 383 2029
>>
>> Email: [log in to unmask]
>> http://www.imperial.ac.uk/medicine/people/c.beckmann/
>>
>>
>>
>> On 21 Sep 2007, at 08:40, Neil Killeen wrote:
>>
>>> Hi
>>>
>>> I'd like to have FEAT *not* use the cluster queue (just for the
>>> moment, don't ask me why ;
>>> I do want other things to use it so I can't unset the SGE
>>> environment variable.
>>>
>>> So I modified fsl_sub to add an extra argument which I could pass
>>> in to tell it to
>>> not use the queue. I then went hunting for where feat calls
>>> fsl_sub, but I
>>> can't find it ! I grepped in bin to find all the things calling
>>> fsl_sub. This gives me:
>>>
>>>
>>> bedpostx
>>> fslvbm_2_template
>>> fslvbm_3_proc
>>> possumX
>>> possumX
>>> run_first_all
>>> tbss_2_reg
>>>
>>>
>>> However, as far as I can tell, none of these are called by feat or
>>> its dependents...
>>>
>>>
>>> Can someone enlighten me as to how feat is getting to fsl_sub (or
>>> if not to fsl_sub,
>>> to the queue).
>>>
>>> thanks
>>> Neil
>>
>>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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