Hi - the easy fix would be to run mcflirt from the command line,
using the -refvol option, and then feed the output into FEAT with MC
turned off in FEAT.
Cheers.
On 30 May 2007, at 04:07, Yaroslav Halchenko wrote:
> Sorry for the noise again. Now I recalled why the heck I started to
> mess
> with target_vol_number at the first place.
>
> MC of one of the subject revealed substantial amount of motion... and
> what is more interesting/problematic is that subject moved during
> TR of
> the 'middle volume', so that the brain got 'extended' and I got
> problems with MC itself since all volumes were aligned to the bad ones
> and registration of the bold to anatomical wasn't good either.
>
> So, an option to select volume to use for registration/MC would be
> great
> On Tue, 29 May 2007, Yaroslav Halchenko wrote:
>
>> Heh.... my bad -- feat does take target_vol_number as the volume
>> number
>> for example_func -- how could I miss that. Sorry about the noise
>
>> P.S. Still, option to have target_vol_number defined manually
>> instead of
>> being computed might be beneficial for the unwarping I guess...
> --
> .-.
> =------------------------------ /v\ ----------------------------=
> Keep in touch // \\ ([log in to unmask])onerussian.com
> Yaroslav Halchenko /( )\ ICQ#: 60653192
> Linux User ^^-^^ [175555]
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