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CCPNMR  February 2007

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Subject:

Re: scrolling through orthogonal planes in 3Ds

From:

Wayne Boucher <[log in to unmask]>

Reply-To:

CcpNmr software mailing list <[log in to unmask]>

Date:

Fri, 23 Feb 2007 10:12:55 +0000

Content-Type:

TEXT/PLAIN

Parts/Attachments:

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TEXT/PLAIN (65 lines)

Hello,

I think either some notifer was missing which didn't update the orthogonal
axis correctly when you swapped the dim mapping (quite possible) or you
need to edit the minimum and maximum aliased frequencies of your spectrum.
Until you asked this question I had even forgotten what algorithm we use
to determine the range of the orthogonal scrollbars, but it looks like it
takes the union of the ranges for each spectrum that is mapped into that
window (but no larger than the universe specified for that axis type under
the Other --> Axes and Panels dialog).

In either case you should be able to fix this by going into the Edit
Spectrum Referencing dialog (so Experiment --> Edit Spectra and then click
on the Referencing button at the bottom).  The minimum and maximum aliased
frequencies are set in the rightmost two columns and if you just change
those, to be at least as big as what you want (and then back again if the
original was really what you wanted)  then hopefully that will fix the
problem.  (I just checked and changing that does call a notifier, so the
scrollbar region is updated.)

Wayne

On Thu, 22 Feb 2007, Justin Douglas wrote:

> Hi,
>
> I'm sure you guys have a list of things to do the length of your arm but I
> have a feature request that I think is important and useful.
>
> I have a 3D that carbon in both indirect dimensions and proton in the direct
> dimension.  Think of it as an CCHcosy-type of experiment.  The thing is that
> the data was collected selectively.  So in the Y-dimension the chemical
> shift ranges from ~85-110 ppm and in the Z-dimension the chemical shift
> ranges from ~135-150 ppm.
>
> When I open the spectrum up I see XY planes where I can scroll through Z.
> No problem.  This is just what we expect.
>
> My question is how to I get analysis to let me see XZ planes where I can
> scroll through Y.
>
> My best guess is that in the "Edit Window Mapped Spectra" Popup I change the
> dim. mapping to D2=z1 and D3=y.  When I do this, it almost works.  I get the
> dotted line box which denotes the ppm range of the spectrum at the correct
> ppms.  The only problem is that can't scroll in (new) Z dimension to ~100
> ppm.
>
> I put screeenshots on the web to clarify.
>
> http://spot.colorado.edu/~jdouglas/ccpn/orthoplane3D.html
>
> ***
>
> By the way I wrote you about a similar problem for 4Ds a while back, but I'm
> not sure I was every very articulate about it.
>
> http://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind0612&L=CCPNMR&P=R44284&I=-3
>
> ***
>
> Thanks,
>
> Justin
>

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