Hi Tim-
Here is my scope.
1. Mac OS 10.4.2 (Tiger).
2. I have no file diff_slices anywhere on my system.
3. The only log file with contents is a reference to Log
directory was: /home/fs3/steve/fsl_dev/src/feeds3.2/data/
fdt_subj1.bedpost/diff_slices/data_slice_0000.
4. bc returns bc 1.06 (I run in bash shell)
Thanks in advance.
Bob
On Nov 2, 2005, at 1:37 AM, Tim Behrens wrote:
> Hi - can you tell me a few things.
> 1) what operating system are you running (e.g. Linux, cygwin etc.)
> 2) what are the contents of the directory fdt_subj1.bedpost/
> diff_slices
> 2) what are the contents of the directory fdt_subj1.bedpost/logs
> 3) do you have a program called bc
> (i.e. if you type bc into a shell, what happens)
>
> Thanks
>
> T
>
> On Tue, 1 Nov 2005, M. Robert willcott wrote:
>
>
>> Hello bedpost users,
>> I am a recent convert to DTI and have been trying to run
>> bedpost on
>> the sample data from the fsl website. I get an error that I would
>> like
>> some help with please. The output is as follows.
>>
>> /Desktop/feeds/data willcott$ sudo bedpost fdt_subj1
>> Password:
>> subjectdir is /Users/willcott/Desktop/feeds/data/fdt_subj1
>> making bedpost directory
>> copying files to bedpost directory
>> processing data on local host
>> Merging outputs into 4D files
>>
>> Usage: avwmerge <-x/y/z/t> <output> <file1 file2 .......>
>>
>> -t : concatenate images in time
>> -x : concatenate images in the x direction
>> -y : concatenate images in the y direction
>> -z : concatenate images in the z direction
>>
>> -a : auto-choose: single slices -> volume, volumes -> 4D (time
>> series)
>>
>>
>> Usage: avwmerge <-x/y/z/t> <output> <file1 file2 .......>
>>
>> -t : concatenate images in time
>> -x : concatenate images in the x direction
>> -y : concatenate images in the y direction
>> -z : concatenate images in the z direction
>>
>> -a : auto-choose: single slices -> volume, volumes -> 4D (time
>> series)
>>
>>
>> Usage: avwmerge <-x/y/z/t> <output> <file1 file2 .......>
>>
>> -t : concatenate images in time
>> -x : concatenate images in the x direction
>> -y : concatenate images in the y direction
>> -z : concatenate images in the z direction
>>
>> -a : auto-choose: single slices -> volume, volumes -> 4D (time
>> series)
>>
>> DONE
>> /usr/local/fsl/bin/bedpost: line 293: syntax error: unexpected end of
>> file
>>
>>
>>
>>
>>
>
> --
> ----------------------------------------------------------------------
> ---------
> Tim Behrens
> Centre for Functional MRI of the Brain
> The John Radcliffe Hospital
> Headley Way Oxford OX3 9DU
> Oxford University
> Work 01865 222782
> Mobile 07980 884537
> ----------------------------------------------------------------------
> ---------
>
|