Hi - can you tell me a few things.
1) what operating system are you running (e.g. Linux, cygwin etc.)
2) what are the contents of the directory fdt_subj1.bedpost/diff_slices
2) what are the contents of the directory fdt_subj1.bedpost/logs
3) do you have a program called bc
(i.e. if you type bc into a shell, what happens)
Thanks
T
On Tue, 1 Nov 2005, M. Robert willcott wrote:
> Hello bedpost users,
> I am a recent convert to DTI and have been trying to run bedpost on
> the sample data from the fsl website. I get an error that I would like
> some help with please. The output is as follows.
>
> /Desktop/feeds/data willcott$ sudo bedpost fdt_subj1
> Password:
> subjectdir is /Users/willcott/Desktop/feeds/data/fdt_subj1
> making bedpost directory
> copying files to bedpost directory
> processing data on local host
> Merging outputs into 4D files
>
> Usage: avwmerge <-x/y/z/t> <output> <file1 file2 .......>
>
> -t : concatenate images in time
> -x : concatenate images in the x direction
> -y : concatenate images in the y direction
> -z : concatenate images in the z direction
>
> -a : auto-choose: single slices -> volume, volumes -> 4D (time series)
>
>
> Usage: avwmerge <-x/y/z/t> <output> <file1 file2 .......>
>
> -t : concatenate images in time
> -x : concatenate images in the x direction
> -y : concatenate images in the y direction
> -z : concatenate images in the z direction
>
> -a : auto-choose: single slices -> volume, volumes -> 4D (time series)
>
>
> Usage: avwmerge <-x/y/z/t> <output> <file1 file2 .......>
>
> -t : concatenate images in time
> -x : concatenate images in the x direction
> -y : concatenate images in the y direction
> -z : concatenate images in the z direction
>
> -a : auto-choose: single slices -> volume, volumes -> 4D (time series)
>
> DONE
> /usr/local/fsl/bin/bedpost: line 293: syntax error: unexpected end of
> file
>
>
>
>
--
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Tim Behrens
Centre for Functional MRI of the Brain
The John Radcliffe Hospital
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Oxford University
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