Hi - if things are still 90 degrees out, one way or another, then you just
need to keep playing with the avwswapdim command until it's right, with
some combination/ordering of the +/- x/y/y options. Also, don't forget
that if you're not careful you'll end up getting L-R inverted!
Cheers, Steve.
On Mon, 25 Jul 2005, Margaret Duff wrote:
> hi, i am trying to view functional images in fslview that are in spm
> format. they were upside down, and i fixed that using avwswapdim. but
> the sagittal slices are still 90 degrees rotated clockwise. if i try
> using avwswapdim on that coordinate, it just becomes rotated 90 degrees
> counterclockwise. is there any command to tell the slices how much to
> rotate? or do i need to use a different program or convert it to another
> format? thanks, margaret
>
--
Stephen M. Smith DPhil
Associate Director, FMRIB and Analysis Research Coordinator
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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