Hi Rick,
>From the mailing list archives:
http://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind0406&L=fsl&P=R7704&I=-1
> 1) Is there any way of sparing reg_standard directories in higher
level
> analysis ?
The "fix" is to open $FSLDIR/tcl/feat.tcl in a text editor and find all
the lines with the command featregapply in them (there are 3, I
believe). At the end of those lines you will find -c, for cleanup (see
featregapply usage). Delete the -c's and you will have a "version" of
Feat that saves normalised COPEs (and VARCOPEs) in a directory called
reg_standard/stats within the first level .feat directory.
You can run featregapply on any .feat directory, assuming you have run
registration for it at first level. So you don't need to re-run your
higher level analysis just to get to the normalised lower level cope
images.
Usage: featregapply <feat_directory>
Best regards,
Chris
--
Christopher Bailey <[log in to unmask]>
MSc Physicist (FMRI/MEG research)
Center for Functionally Integrative Neuroscience
Aarhus University Hospital, Denmark
http://www.cfin.au.dk/
On Mon, 2004-08-02 at 13:31, Rick Hoge wrote:
> We've been running group analyses and wanted to inspect the spatially
> normalized statistical maps of individual subjects, but have had
> trouble finding these.
>
> It seems necessary that at some point the individual subject maps would
> have been registered to standard space, but we can't find these maps
> anywhere. Are they created in a temporary directory that is removed at
> the end of analysis? Is there a way to prevent the removal? I would
> assume it is the cope images that are transformed - is this in fact the
> case?
>
> Thanks for any answers to these questions,
>
> Rick
|