Hello everybody,
I am experiencing problems with flirt (FSL3) that I didn't have with previous
version.
This is what I do:
flirt -in stack.hdr -ref ../../T1/T1_brain_to_T2_flirt.hdr -out
stack_flirt.hdr -omat stack_flirt.mat -bins 256 -cost corratio -searchrx 0 0
-searchry 0 0 -searchrz 0 0 -dof 12 -interp trilinear -paddingsize 1
and after that
flirt -in CBVu_256 -ref ../../T1/T1_brain_to_T2_flirt -out CBVu_256_flirt
-applyxfm -init stack_flirt.mat -paddingsize 1
The last command, however fails saying
Image Exception : #5 :: Out of Bounds (time index)
Aborted
Does anyone have an idea what's going on.
Thanks in advance for help,
Martin
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