I ran the above commands twice; first on the set that actually worked.
From 1 I got:
Cannot create
directory "/usr/b/ibinson/fsl_painandte/s1r2/ting60/I.0.feat/stats": File
exists
Results are in
directory /usr/b/ibinson/fsl_painandte/s1r2/ting60/I.0.feat/stats+
Loading image... Completed
Applying threshold to Series... Completed
iters = 2
Calculating residuals...
Completed
Estimating residual autocorrelation...
Calculating raw AutoCorrs... Completed
mode = 12430
sig = 847
Spatially smoothing auto corr estimates
/usr/c/aalgaze/fsl/bin/susan_smooth /usr/b/ibinson/fsl_painandte/s1r2/ting60
/I.0.feat/stats+/preSmoothVol 1 /us
r/b/ibinson/fsl_painandte/s1r2/ting60/I.0.feat/stats+/postSmoothVol 5 3D 0
1 /usr/b/ibinson/fsl_painandte/s1r2/
ting60/I.0.feat/stats+/epivolume
282 /usr/b/ibinson/fsl_painandte/s1r2/ting60/I.0.feat/stats+/usanSize
..................
rm -
rf /usr/b/ibinson/fsl_painandte/s1r2/ting60/I.0.feat/stats+/postSmoothVol* /
usr/b/ibinson/fsl_painandte/s1r
2/ting60/I.0.feat/stats+/preSmoothVol* /usr/b/ibinson/fsl_painandte/s1r2/tin
g60/I.0.feat/stats+/usanSize*
Completed
Tukey M = 8
Tukey estimates... Completed
Completed
Prewhitening...
0.0418881,0.0837762,0.125664,0.167552,0.209441,0.251329,0.293217,0.335105,0.
376993,0.418881,0.460769,0.502657,0
.544545,0.586433,0.628322,0.67021,0.712098,0.753986,0.795874,0.837762,0.8796
5,0.921538,0.963426,Completed
Unthresholding Series... Completed
Saving image... Completed
Thresholding Series... Completed
Computing parameter estimates...
Completed
Saving results...
Unthresholding Series... Completed
Saving image... Completed
Completed
From 3 and 4 I got;
verbose = 1
help = 0
dof = 78
maskname = /usr/b/ibinson/fsl_painandte/s1r2/ting60/I.0.feat/mask
residname = /usr/b/ibinson/fsl_painandte/s1r2/ting60/I.0.feat/stats/res4d
zstatname = zstat
Reading mask....done
Reading datafile....AvwOpen: Error while opening header!: No such file or
directory
Failed to open
residuals: /usr/b/ibinson/fsl_painandte/s1r2/ting60/I.0.feat/stats/res4d
Then I ran it on one that doesn't work:
Cannot create
directory "/usr/b/ibinson/fsl_painandte/s1r2/ting40/I.0.feat/stats": File
exists
Results are in
directory /usr/b/ibinson/fsl_painandte/s1r2/ting40/I.0.feat/stats+
Loading image... Completed
Applying threshold to Series... Completed
iters = 2
Calculating residuals...
Completed
Estimating residual autocorrelation...
Calculating raw AutoCorrs...Completed
mode = 12576.2
sig = 511
Spatially smoothing auto corr estimates
/usr/c/aalgaze/fsl/bin/susan_smooth /usr/b/ibinson/fsl_painandte/s1r2/ting40
/I.0.feat/stats+/preSmoothVol 1 /us
r/b/ibinson/fsl_painandte/s1r2/ting40/I.0.feat/stats+/postSmoothVol 5 3D 0
1 /usr/b/ibinson/fsl_painandte/s1r2/
ting40/I.0.feat/stats+/epivolume
170 /usr/b/ibinson/fsl_painandte/s1r2/ting40/I.0.feat/stats+/usanSize
..................
rm -
rf /usr/b/ibinson/fsl_painandte/s1r2/ting40/I.0.feat/stats+/postSmoothVol* /
usr/b/ibinson/fsl_painandte/s1r
2/ting40/I.0.feat/stats+/preSmoothVol* /usr/b/ibinson/fsl_painandte/s1r2/tin
g40/I.0.feat/stats+/usanSize*
Completed
Tukey M = 8
Tukey estimates... Completed
Completed
Prewhitening...
0.0390177,0.0780355,0.117053,0.156071,0.195089,0.234106,0.273124,0.312142,0.
35116,0.390177,0.429195,0.468213,0.
507231,0.546248,0.585266,0.624284,0.663302,0.702319,0.741337,0.780355,0.8193
72,0.85839,0.897408,0.936426,0.9754
43,Completed
Unthresholding Series... Completed
Saving image... Completed
Thresholding Series... Completed
Computing parameter estimates...
Completed
Saving results...
Unthresholding Series... Completed
Saving image... Completed
Completed
Part 3 and 4;
verbose = 1
help = 0
dof = 78
maskname = /usr/b/ibinson/fsl_painandte/s1r2/ting40/I.0.feat/mask
residname = /usr/b/ibinson/fsl_painandte/s1r2/ting40/I.0.feat/stats/res4d
zstatname = zstat
Reading mask....done
Reading datafile....AvwOpen: Error while opening header!: No such file or
directory
Failed to open
residuals: /usr/b/ibinson/fsl_painandte/s1r2/ting40/I.0.feat/stats/res4d
Looks basically the same.
Jim
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