Hi - don't worry about sending the data - it will hopefully be the same
input image (structural_brain) as we have here in
/usr/local/fsl/etc/feeds/data
The most likely problem is that there are SGI library
incompatibilities...could you just try running
fast structural_brain
and tell us what happens?
Thanks, Steve.
Stephen M. Smith
Head of Image Analysis, FMRIB
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
On Tue, 21 Aug 2001, Zrinka Bilusic wrote:
> I have just downloaded FSL binaries for SGI and unpacked them on our
> system (details below) but when I run the evaluation, some tests are
> failing - I have attached the printout from the screen (I can send you
> the output files if needed later).
>
> Any help would be much appreciated! Thank you!
> Zrinka
>
> ------
> FSL Evaluation and Example Data Suite v1.3
>
> start time = Tue Aug 21 00:40:05 PDT 2001
> hostname = bmc.loni.ucla.edu
> os = IRIX64 bmc 6.5 04191226 IP30
>
> Starting BET at Tue Aug 21 00:40:05 PDT 2001
> /usr/local/fsl/bin/bet /usr/users/zrinka/feeds/data/structural
> /usr/users/zrinka/feeds/results/structural_brain
> % error = 0.0
>
> Starting SUSAN at Tue Aug 21 00:41:00 PDT 2001
> /usr/local/fsl/bin/susan_smooth /usr/users/zrinka/feeds/data/structural
> 2000 /usr/users/zrinka/feeds/results/structural_susan 2 3 1 0
> % error = 0.0
>
> Starting FAST at Tue Aug 21 00:47:58 PDT 2001
> /usr/local/fsl/bin/fast -od
> /usr/users/zrinka/feeds/results/structural_brain -ob -or -e -ov
> /usr/users/zrinka/feeds/data/structural_brain
> checking error on single-image binary segmentation:
> No output image created
> Warning - test failed!
> checking error on bias field:
> No output image created
> Warning - test failed!
> checking error on restored image:
> No output image created
> Warning - test failed!
> checking error on partial volume images:
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
>
> Starting FLIRT at Tue Aug 21 01:11:46 PDT 2001
> /usr/local/fsl/bin/flirt -ref /usr/local/fsl/etc/standard/avg152T1_brain
> -in /usr/users/zrinka/feeds/data/structural_brain -out
> /usr/users/zrinka/feeds/results/structural_brain2standard -omat
> /usr/users/zrinka/feeds/results/structural_brain2standard.mat -interp
> sinc
> % error = 0.0
>
> Starting PRELUDE & FUGUE at Tue Aug 21 01:21:53 PDT 2001
> /usr/local/fsl/bin/prelude -c /usr/users/zrinka/feeds/data/fieldmap -u
> /usr/users/zrinka/feeds/results/unwrapped_phase
> % error = 0.0
> /usr/local/fsl/bin/fugue -i /usr/users/zrinka/feeds/data/epi -p
> /usr/users/zrinka/feeds/results/unwrapped_phase -d 0.295 -u
> /usr/users/zrinka/feeds/results/unwarped_epi
> % error = 0.0
>
> Starting SIENAX at Tue Aug 21 01:22:00 PDT 2001
> /usr/local/fsl/bin/sienax /usr/users/zrinka/feeds/results/structural -d
> syntax error in expression "100.0 * ( 2.3612025054
> dc: stack empty
> dc: stack empty
> Can't"
> while executing
> "expr 100.0 * ( $a - $b ) / $denom "
> (procedure "simpleperror" line 5)
> invoked from within
> "simpleperror $A $B 1600000"
> (file "./RUN" line 196)
> 4569.6u 41.8s 1:19:28 96% 0+0k 1275+129io 1509pf+0w
> ---------
>
|