Dear Pavlina,
the ROI tool checks the filenames of the original (VBM) analysis and should contain one of the following patterns
mwp
m0wp
wp
These are the patterns usually found in the filenames after segmentation. In your case, I assume that you have renamed or moved the files.
Best,
Christian
On Thu, 7 Mar 2024 14:18:24 +0100, Pavlina Lieskovsky <[log in to unmask]> wrote:
>Dear all,
>
>I am currently facing an issue while attempting ROI analysis in CAT12.
>Specifically, I keep encountering the following error message: "ROI
>analysis is only supported for VBM of GM/WM/CSF. No ROI values for DBM will
>be estimated." I followed the VBM longitudinal data CAT12 manual during
>preprocessing.
>
>I have attached my script and screenshots of my batch. I would greatly
>appreciate it if someone could review these and offer insights into why
>this error is occurring and if there is some reason this data could be DBM.
>
>Thank you very much for your attention and assistance.
>
>Warm regards,
>
>Pavlina
>%-----------------------------------------------------------------------
>%%
>matlabbatch{1}.spm.tools.cat.long.datalong.timepoints = {
>{
>..............baseline files
>}
>{
>..............follow up files'
>}
>}';
>%%
>matlabbatch{1}.spm.tools.cat.long.longmodel = 2;
>matlabbatch{1}.spm.tools.cat.long.enablepriors = 1;
>matlabbatch{1}.spm.tools.cat.long.prepavg = 2;
>matlabbatch{1}.spm.tools.cat.long.bstr = 0;
>matlabbatch{1}.spm.tools.cat.long.avgLASWMHC = 0;
>matlabbatch{1}.spm.tools.cat.long.nproc = 4;
>matlabbatch{1}.spm.tools.cat.long.opts.tpm = {
>'/Users/Downloads/spm12/tpm/TPM.nii'};
>matlabbatch{1}.spm.tools.cat.long.opts.affreg = 'mni';
>matlabbatch{1}.spm.tools.cat.long.opts.biasacc = 0.5;
>matlabbatch{1}.spm.tools.cat.long.extopts.restypes.optimal = [1 0.3];
>matlabbatch{1}.spm.tools.cat.long.extopts.setCOM = 1;
>matlabbatch{1}.spm.tools.cat.long.extopts.APP
><http://spm.tools.cat.long.extopts.app/> = 1070;
>matlabbatch{1}.spm.tools.cat.long.extopts.affmod = 0;
>matlabbatch{1}.spm.tools.cat.long.extopts.spm_kamap = 0;
>matlabbatch{1}.spm.tools.cat.long.extopts.LASstr = 0.5;
>matlabbatch{1}.spm.tools.cat.long.extopts.LASmyostr = 0;
>matlabbatch{1}.spm.tools.cat.long.extopts.gcutstr = 2;
>matlabbatch{1}.spm.tools.cat.long.extopts.WMHC = 2;
>matlabbatch{1}.spm.tools.cat.long.extopts.registration.shooting.shootingtpm
>= {
>'/Users/Downloads/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii'
>};
>matlabbatch{1}.spm.tools.cat.long.extopts.registration.shooting.regstr =
>0.5;
>matlabbatch{1}.spm.tools.cat.long.extopts.vox = 1.5;
>matlabbatch{1}.spm.tools.cat.long.extopts.bb = 12;
>matlabbatch{1}.spm.tools.cat.long.extopts.SRP = 22;
>matlabbatch{1}.spm.tools.cat.long.extopts.ignoreErrors = 1;
>matlabbatch{1}.spm.tools.cat.long.output.BIDS.BIDSno = 1;
>matlabbatch{1}.spm.tools.cat.long.output.surface = 1;
>matlabbatch{1}.spm.tools.cat.long.ROImenu.atlases.neuromorphometrics = 1;
>matlabbatch{1}.spm.tools.cat.long.ROImenu.atlases.lpba40 = 1;
>matlabbatch{1}.spm.tools.cat.long.ROImenu.atlases.cobra = 1;
>matlabbatch{1}.spm.tools.cat.long.ROImenu.atlases.hammers = 0;
>matlabbatch{1}.spm.tools.cat.long.ROImenu.atlases.thalamus = 1;
>matlabbatch{1}.spm.tools.cat.long.ROImenu.atlases.thalamic_nuclei = 1;
>matlabbatch{1}.spm.tools.cat.long.ROImenu.atlases.suit = 1;
>matlabbatch{1}.spm.tools.cat.long.ROImenu.atlases.ibsr = 0;
>matlabbatch{1}.spm.tools.cat.long.ROImenu.atlases.ownatlas = {''};
>matlabbatch{1}.spm.tools.cat.long.longTPM = 1;
>matlabbatch{1}.spm.tools.cat.long.modulate = 1;
>matlabbatch{1}.spm.tools.cat.long.dartel = 0;
>matlabbatch{1}.spm.tools.cat.long.printlong = 2;
>matlabbatch{1}.spm.tools.cat.long.delete_temp = 1;
>
>
>
>[image: image.png]
>
>[image: image.png]
>
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